PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012342m
Common NameCICLE_v10012342mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 295aa    MW: 35210.6 Da    PI: 8.8316
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012342mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.35.4e-2549131186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+ qe+++ + +r e+++++ ++k++k lWe +s +mre+g++rs++qCk+kw+nl +ryk ++++e +     ++++p++++l+
  Ciclev10012342m  49 QWSVQETKEFLVIRAELDRSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYNELQ 131
                      7********************************************************************95...56689*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001146108IPR001005SANT/Myb domain
CDDcd122031.17E-2248113No hitNo description
PfamPF138374.5E-2049133No hitNo description
PROSITE profilePS500907.3450106IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEGHHQHHQH HHHHHQQQQI HQQQQQQQQH LQHPPHISVN VDTSDRFPQW SVQETKEFLV  60
IRAELDRSFM ETKRNKLLWE VISTRMREKG YNRSAEQCKC KWKNLVTRYK GCETMEPEAM  120
RQQFPFYNEL QAIFASRMQR MLWAETEGGS KKKAAAAVQL SSEEEDFNEE SEGEKGNVMR  180
KKKKSKSSTG GAGASGSGSA SSSHNFKEIL EEFMKQQMQM EMQWREAFEA RENERRIKEM  240
EWRQTMEALE NERIMMDRRL REREEQRRMR EEARAEKRDA LITALLNKLR REDM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429405.10.0trihelix transcription factor GT-3b
RefseqXP_024037243.10.0trihelix transcription factor GT-3b
RefseqXP_024037244.10.0trihelix transcription factor GT-3b
SwissprotQ9SDW05e-72TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLV4SUJ20.0V4SUJ2_9ROSI; Uncharacterized protein
STRINGXP_006429405.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-54Trihelix family protein