PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011887m
Common NameCICLE_v10011887mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 401aa    MW: 43616.6 Da    PI: 8.9488
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011887mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.23.8e-31612182119
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssa 70 
                       g+kdrhsk++T +g+RdRRvRls+++a++++ Lqd+LG+ ++sk ++WLl++ak +i+el+ +                         +    
  Ciclev10011887m  61 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYGLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLpalippenfglnnhhqeitlssngnE---- 150
                      689*************************************************************87666666666555544444322220.... PP

              TCP  71 seceaesssssasnsssg....................................kaaksaakskksqksaasalnlakesrakar 119
                                       +                                    +  ++a  ++k  + +a++ n  kes ++ r
  Ciclev10011887m 151 -----------------AaggagssqisskqgsfsiknwesadprsdnawsseeAFWRAADYKSKLATANANKENWTKESDHQYR 218
                      .................12222222222222223343444444444444444432222222223333333334444444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-2963217IPR005333Transcription factor, TCP
PROSITE profilePS5136930.46263121IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MCTKNNEIRS HEMITSSKEA VCSSKQEGNT GEGKIVITKA SSSSAWLRLK DPRIVRVSRA  60
FGGKDRHSKV CTIRGLRDRR VRLSVPTAIQ LYGLQDRLGL NQPSKVVDWL LNAAKDEIDE  120
LPPLPALIPP ENFGLNNHHQ EITLSSNGNE AAGGAGSSQI SSKQGSFSIK NWESADPRSD  180
NAWSSEEAFW RAADYKSKLA TANANKENWT KESDHQYREK VQEPSSSINF LPRRPCATST  240
NSSLPPLSNN LFNNANALPF GPYYHLEPSN IPFSHHQYLA SHGLNITSQT EDLHNFNVVQ  300
LPSPLSLSSA AAAGSQILVC PPLPPGAGAG ATQPLVFPSQ INHFQMLSPT NSSHGVTANS  360
HFQATPHTIR PFHLGMTSRF LPSHGGTGSQ SDKDKEFPSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1768122155Putative transcription factor PCF6
5zkt_B1e-1768122155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431308.10.0transcription factor TCP5
TrEMBLV4SAI00.0V4SAI0_9ROSI; Uncharacterized protein
STRINGXP_006431308.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-39plastid transcription factor 1