PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008813m
Common NameCICLE_v10008813mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 348aa    MW: 37946.3 Da    PI: 6.416
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008813mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.18.7e-09436436
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                     + C+ +++  ++ fC+ ++ +lC +C +++H  
  Ciclev10008813m  4 KLCDSCKSATATVFCRADSAFLCVNCDTKIHAA 36
                     58*****************************54 PP
2zf-B_box27.75.6e-094691342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Ciclev10008813m 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                     689*****************************66899999*99986 PP
3CCT69.39.9e-24282325144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Ciclev10008813m 282 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 325
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694148IPR000315B-box-type zinc finger
SMARTSM003364.4E-15148IPR000315B-box-type zinc finger
PfamPF006431.3E-6443IPR000315B-box-type zinc finger
CDDcd000211.18E-9548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006432.4E-74691IPR000315B-box-type zinc finger
CDDcd000212.02E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658282324IPR010402CCT domain
PfamPF062031.5E-17282324IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MASKLCDSCK SATATVFCRA DSAFLCVNCD TKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVDS SAVKQGNGGV VNFLDEDRYL  120
DHVDGRSGDV SREEAEAASW LLPIPKVADL NTGQAQEPYV FPDMDPYLDL EYGHVDTKLE  180
AQEQNSSGTD GVVPVQTRNV NANGHLVNDA CFDLDFPGSK SYGYGYNSHS QCLSQSVSSS  240
SLEVGVVPDG SSAMTDITNP YGKGVGVEAG NQTVVQISAA DREARVLRYR EKRKNRKFEK  300
TIRYASRKAY AEMRPRIKGR FAKRTDLEVE PADRSSSIYG FGIVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.28090.0abscission zone| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450227.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-137COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLV4UBP80.0V4UBP8_9ROSI; Uncharacterized protein
STRINGXP_006450227.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-136CONSTANS-like 4