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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10008390m | ||||||||
Common Name | CICLE_v10008390mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TCP | ||||||||
Protein Properties | Length: 427aa MW: 46861.2 Da PI: 7.3165 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.4 | 1.2e-34 | 35 | 159 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec..eaesss 79 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ + + +++++ Ciclev10008390m 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwnpgtvtntrasT------AksRNAHHQ 122 79**************************************************************998887765433210......111111111 PP TCP 80 ssasnsssg.............kaaksaakskksqksaasal 108 +s+ + + ++ + + ++q++++s+l Ciclev10008390m 123 QSE-----AneernfqypgssnDVQNLPMVETPNQNQSSSFL 159 111.....1122234455555422222223333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-31 | 35 | 156 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MGESHNHAIT SSRLGIRNTG GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA AIDELAELPP WNPGTVTNTR ASTAKSRNAH 120 HQQSEANEER NFQYPGSSND VQNLPMVETP NQNQSSSFLP PALDSDSIAD TIKSFFPMGA 180 STDTTASSIQ FQNYSPDLLS RTTTSHSQDL RLSLQSFQEP NSILLQHRQQ PHPHHHAHSH 240 SHQHQQQNEQ VQVLFSGTTP LGGYDTASAA ASAWSESAEM SRFQRMVAWN SGGGAADDSA 300 GNASGGGFVF NSQQPPPVQP LFGQNQLFHS QRGPLQSSNT PSVRAWIDQP IGLTNDHRQQ 360 HHHHLHHHQI LQQPAVHQSV ISGIGFASPV GEFSGFRIPA RIQGEDEEHD HGIHNRPSSA 420 SSDSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ505958 | 0.0 | GQ505958.1 Citrus trifoliata cultivar Zhi TCP4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451744.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_006485680.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-107 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2H5PZJ6 | 0.0 | A0A2H5PZJ6_CITUN; Uncharacterized protein | ||||
TrEMBL | V4WEK3 | 0.0 | V4WEK3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485680.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006451744.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-102 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10008390m |
Entrez Gene | 18053998 |