PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10001824m

Common Name

CICLE_v10001824mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SRS

Protein Properties

Length: 328aa MW: 36339.8 Da PI: 7.1525

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10001824m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227.6	2.3e-70	107	260	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssa 94 g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++++++ ++++ ++ ++++q++ + +++ Ciclev10001824m 107 GGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQRHQQQQEQQQLNQQDSQHhhHHHQQQQFRGENPKRQ 200 5789***************************************************9999888754444433333114455555666666677 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ le+s++P+e+ss+avfrcvrvs++dd +ee+aYqtav+igGhvfkGiLydqG+e+ Ciclev10001824m 201 RENQGLEVSQFPSELSSSAVFRCVRVSAIDDPDEEFAYQTAVHIGGHVFKGILYDQGPEN 260 788999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-66	109	259	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-27	111	153	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-26	210	258	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MAGWFYLGGR EEARSKQEEE EEKEENLYLY RSSANEEIYN STKGFELWPQ YYHQQQENMS 60 NYLSFGVGPS RRSSSNFINA AAASDESSRS GGFVMRQGVG GGGGGGGGGM NCQDCGNQAK 120 KDCPHMRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL AALQRHQQQQ EQQQLNQQDS 180 QHHHHHHQQQ QFRGENPKRQ RENQGLEVSQ FPSELSSSAV FRCVRVSAID DPDEEFAYQT 240 AVHIGGHVFK GILYDQGPEN RYTAAAESSH SQQLNLITAA TATTTTTTGT VAAGTSNPSA 300 NLIDPSLYPA PLNAFIAGTQ FFPPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC160013	2e-35	AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence.
GenBank	AC183777	2e-35	AC183777.9 Medicago truncatula clone mth2-67d13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435091.1	0.0	protein SHI RELATED SEQUENCE 5 isoform X3
Swissprot	Q9LQZ5	2e-91	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	V4TF82	0.0	V4TF82_9ROSI; Uncharacterized protein
STRING	XP_006435091.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-72	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10001824m
Entrez Gene	18042934

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]