PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000702m
Common NameCICLE_v10000702mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 577aa    MW: 61063.5 Da    PI: 7.2072
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000702mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.21.2e-371732883115
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++       
  Ciclev10000702m 173 PVKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaph 266
                      6799****************************************************************99988899999999777776544333 PP

              TCP  89 .kaaksaakskksqksaasalnlakesr 115
                              ++  + + aa+++n ++ ++
  Ciclev10000702m 267 sF------HGALALAAAAQHHNHHHPHH 288
                      30......33333333333344333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-40177349IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496178232IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MELTTDLQSN KQNTTTTTTN SASAAAELQR QQQHHRHLHL PQQQFDGRSV PFISSISIQA  60
GLSHGGGGGG GGGSGGAVHV ITSSSSTTAS SSTTGSSSSS SLSSSSSLTL SSPSSTNPVP  120
PTQHAVVDAS LAIATRSSST PAPNNQQNLN MTATASTSTT TAITTTTTTA PPPVKRSTKD  180
RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA  240
NFSTLNVSLR SSGSTLSAPP SKSAPHSFHG ALALAAAAQH HNHHHPHHPH PQYEEGFPHT  300
ALLGFHHQQQ QQQHHLMTAD QIAEALPSES GGGDNNNSNE NYMRKRFRED LFKDDHTNSS  360
NDNGNNNDQS QGESGGGGEE RRKQMQNKQQ QQQVLPATPM WAVTPGPPSS GAGSTFWMVT  420
GASGAAAGAG PSEQQPQPQP QIWPFQHPVA AATPSTATTL QAPLHFVPRF NLPTGNLEFQ  480
TGRAANPLQL GSMLMHQHQH QQQPSQQLGL GMNESNLGML AALNAVYSRA GGLNMNMNMT  540
AEQNNPMEHH HHHQHHQQQQ PQGSDSGGDE DPNNSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431726.10.0transcription factor TCP8
TrEMBLA0A2H5PWY60.0A0A2H5PWY6_CITUN; Uncharacterized protein
TrEMBLV4T5Y30.0V4T5Y3_9ROSI; Uncharacterized protein
STRINGXP_006431726.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-56TCP family protein