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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_48539 | ||||||||
Common Name | KK1_050225 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 56aa MW: 6562.53 Da PI: 6.4992 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.9 | 1.7e-18 | 1 | 52 | 1 | 53 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka 53 lppGfrFhPtdee v +yL++k++++++ + +i+e+d+yk++PwdLp k+k+ C.cajan_48539 1 LPPGFRFHPTDEEHVLHYLCPKCASHQIVV-PIITEIDLYKYDPWDLPGKIKH 52 79*************************999.88***************76655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.533 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-19 | 1 | 51 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-7 | 2 | 44 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 56 aa Download sequence Send to blast |
LPPGFRFHPT DEEHVLHYLC PKCASHQIVV PIITEIDLYK YDPWDLPGKI KHTHTD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-20 | 1 | 47 | 15 | 61 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_48539 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020236522.1 | 3e-25 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 3e-23 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A151UEV7 | 2e-33 | A0A151UEV7_CAJCA; NAC domain-containing protein 2 (Fragment) | ||||
STRING | XP_002520341.1 | 3e-23 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11433 | 17 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-25 | NAC family protein |