PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_44182

Common Name

KK1_043606

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 276aa MW: 31840 Da PI: 7.3729

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_44182	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.8	1.2e-54	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ C.cajan_44182 10 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIY 104 69**************************.9***********943444443456********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +g++ktLvfy+grap+g+ktdW+mheyrl C.cajan_44182 105 HTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-60	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.522	10	159	IPR003441	NAC domain
Pfam	PF02365	2.5E-28	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0010455	Biological Process	positive regulation of cell fate commitment
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MMPGNGQLTV PPGFRFHPTD EELLYYYLRK KVSYEAIDLD VIREVDLNKL EPWDLKDKCR 60 IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIYHTNSKR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLD EDDADVQEDG WVVCRVFKKK NQNRGFQQEM EEEEHLTHMR 180 GSGPCQVLEP KHHMQGGLYD YNFDGTMHLP QLFSPESAVP PTTSLASSMN AMDILECSQN 240 LLRLTTTGST PVGTSAQKFP FHYLGCDTHD IMKFSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	7	161	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	7	161	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	7	161	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	7	161	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	7	161	17	170	NAC domain-containing protein 19
3swm_B	1e-52	7	161	17	170	NAC domain-containing protein 19
3swm_C	1e-52	7	161	17	170	NAC domain-containing protein 19
3swm_D	1e-52	7	161	17	170	NAC domain-containing protein 19
3swp_A	1e-52	7	161	17	170	NAC domain-containing protein 19
3swp_B	1e-52	7	161	17	170	NAC domain-containing protein 19
3swp_C	1e-52	7	161	17	170	NAC domain-containing protein 19
3swp_D	1e-52	7	161	17	170	NAC domain-containing protein 19
4dul_A	1e-52	7	161	14	167	NAC domain-containing protein 19
4dul_B	1e-52	7	161	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00250	DAP	Transfer from AT1G79580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_44182

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-123	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206343.1	0.0	NAC domain-containing protein 76
Swissprot	Q5Z6B6	1e-111	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A151QYH5	0.0	A0A151QYH5_CAJCA; NAC domain-containing protein 76
STRING	XP_007149140.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7204	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-101	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]