PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_42309

Common Name

KK1_042914

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 305aa MW: 35498.4 Da PI: 8.6736

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_42309	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.3	3.8e-50	19	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPtdeelv +yL +kve+k+l++ e ik+vdiyk++PwdLpk + ++kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk++++ C.cajan_42309 19 LPGFRFHPTDEELVGFYLLRKVEKKPLRI-ELIKQVDIYKYDPWDLPKVNSVGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKNIYCVke 113 69*************************.89***********7666799**********************************9744 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl C.cajan_42309 114 PHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146 5566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-55	16	172	IPR003441	NAC domain
PROSITE profile	PS51005	53.175	18	173	IPR003441	NAC domain
Pfam	PF02365	3.4E-25	20	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MNAKVSTSDD TKKDEEIVLP GFRFHPTDEE LVGFYLLRKV EKKPLRIELI KQVDIYKYDP 60 WDLPKVNSVG DKEWYFFCIR GRKYRNSVRP NRVTRSGFWK ATGIDKNIYC VKEPHECIGL 120 KKSLVYYRGS AGKGTKTDWM MHEFRLPPNA KSTNNTNDLQ EAEVWTLCRI FKRTPSFKKY 180 TPNLKESTTP VTKPNPVNSN TCTLDSENCK PYLICRDPLG MQQIERKPVI GQVDEKKHLF 240 LGQFAPIPHH HQAPPNPYPS FWNQNVEDYA FANENWDDLR SVVQFAIDPS TVFDCTEAYV 300 PPYFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	20	179	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	20	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	20	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	20	179	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	20	179	22	174	NAC domain-containing protein 19
3swm_B	1e-47	20	179	22	174	NAC domain-containing protein 19
3swm_C	1e-47	20	179	22	174	NAC domain-containing protein 19
3swm_D	1e-47	20	179	22	174	NAC domain-containing protein 19
3swp_A	1e-47	20	179	22	174	NAC domain-containing protein 19
3swp_B	1e-47	20	179	22	174	NAC domain-containing protein 19
3swp_C	1e-47	20	179	22	174	NAC domain-containing protein 19
3swp_D	1e-47	20	179	22	174	NAC domain-containing protein 19
4dul_A	1e-47	20	179	19	171	NAC domain-containing protein 19
4dul_B	1e-47	20	179	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_42309

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093838	0.0	BT093838.1 Soybean clone JCVI-FLGm-14E12 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020205893.1	0.0	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	1e-89	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A151R0J3	0.0	A0A151R0J3_CAJCA; NAC domain-containing protein 42
STRING	GLYMA08G41995.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	6e-92	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]