![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_39689 | ||||||||
Common Name | KK1_043061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 28313.4 Da PI: 6.951 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142.3 | 2.8e-44 | 4 | 134 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppG+rF Pt+eel+++yL++k+eg ++++vi+ vdiy ++P++Lp+ + + ++++w+fF++r++++a+g r++r t+sgyWkatg+ ++ C.cajan_39689 4 MPPGYRFYPTEEELISFYLHNKLEGVIKDMNRVIPVVDIYAYNPSQLPQisgeA-SLrDTEQWFFFIPRQESEARGGRPKRLTNSGYWKATGSPNH 98 79****************************99****************645532.2235669********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+ C.cajan_39689 99 VFSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYT 134 ***********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-47 | 2 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.738 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-22 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MENMPPGYRF YPTEEELISF YLHNKLEGVI KDMNRVIPVV DIYAYNPSQL PQISGEASLR 60 DTEQWFFFIP RQESEARGGR PKRLTNSGYW KATGSPNHVF SSDNRIIGIK RTMVFYSGRA 120 PNGTKTDWKM NEYTAIKGEP SSSNKTVPTL RKEFSLCRVY KTSKCLRAFD RRPAPRRDVG 180 GYSGAQNNDE EQQKGSTSYD NPHHTVERRS ATSSPETSSN GEESTQMDVD NDPFLDWEKV 240 DLFLGSEP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-37 | 3 | 161 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-37 | 3 | 161 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-37 | 3 | 161 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-37 | 3 | 161 | 16 | 164 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-37 | 3 | 161 | 16 | 164 | NAC domain-containing protein 19 |
4dul_B | 9e-37 | 3 | 161 | 16 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_39689 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 2e-86 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020205969.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 3e-74 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A151UFB8 | 0.0 | A0A151UFB8_CAJCA; NAC domain-containing protein 90 | ||||
STRING | GLYMA03G35570.1 | 1e-148 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-71 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|