![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | C.cajan_38204 | ||||||||
Common Name | KK1_035675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 21539.6 Da PI: 4.3895 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.4e-18 | 2 | 50 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +g+Wv+eIr p++ r r++lg+++t e+Aa+a +aa +l+g C.cajan_38204 2 YKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTQEKAARAFDAALYCLRG 50 9****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.9E-29 | 1 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.497 | 1 | 58 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 2 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 2 | 13 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.57E-29 | 2 | 60 | No hit | No description |
Pfam | PF00847 | 6.8E-11 | 2 | 50 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-20 | 2 | 59 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-9 | 24 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MYKGVRKRKW GKWVSEIRLP NSRERIWLGS YDTQEKAARA FDAALYCLRG KNAAFNFPDT 60 PQTFEDTNVV VVSHHSRLSP QEIQEVAAKF ANNVNDDPPQ DQEPSLDLES QRSESTLFNN 120 SVCEQVDQVQ GEWDTTFWNM LDDLNGGFLC PTQAPLLFQD QIQGDDYGYY DHDAFSNHSF 180 LWSWNF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 2 | 58 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 8 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | C.cajan_38204 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020239081.1 | 1e-140 | ethylene-responsive transcription factor ERF018 | ||||
Swissprot | Q84QC2 | 3e-42 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A151RK12 | 1e-137 | A0A151RK12_CAJCA; Ethylene-responsive transcription factor ERF017 family | ||||
STRING | GLYMA14G12505.1 | 4e-71 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-44 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|