PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_36992

Common Name

KK1_037841

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 373aa MW: 42302.7 Da PI: 6.7706

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_36992	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.2	8e-54	14	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPtdeelv++yLk+k+++k+l++ e ik+vdiyk++PwdLp + + ++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s++ C.cajan_36992 14 MPGFRFHPTDEELVDFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPkELAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSE 108 79*************************.89***********445566899************************************ PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g+ +glkk+Lvfy+gra kg ktdW+mhe+rl C.cajan_36992 109 GKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 140 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-56	10	171	IPR003441	NAC domain
PROSITE profile	PS51005	56.164	13	171	IPR003441	NAC domain
Pfam	PF02365	4.5E-26	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEERNEMEKI EDVMPGFRFH PTDEELVDFY LKRKIQQKSL PIELIKQVDI YKYDPWDLPK 60 ELAGTGEKEW YFYCPRDRKY RNSARPNRVT RAGFWKATGT DRPIYSSEGK CIGLKKSLVF 120 YRGRAAKGMK TDWMMHEFRL PCISDSAPPK NLSDKSLPPS DSWAICRIFK KTNSLSMAQK 180 ALSHPWISQL PGSMVPDMFS HGANFPQLGS PAIQFCGDKQ ELHQVSNGTN TNFSASDISP 240 TYKPINSTVS KPSQVPVPDG DLSDNFIFCT GPTKSTLDNA TSSMLSPNNP DYIAFEEPNQ 300 HYSGFSISLL PQDMQQNLST ETKEQEWETV VRNTGFPFSL PPYDAWKASS VPWDSPPCPS 360 DMSTTFSTNK CYT

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEERNEMEKI EDVMPGFRFH PTDEELVDFY LKRKIQQKSL PIELIKQVDI YKYDPWDLPK  60
ELAGTGEKEW YFYCPRDRKY RNSARPNRVT RAGFWKATGT DRPIYSSEGK CIGLKKSLVF  120
YRGRAAKGMK TDWMMHEFRL PCISDSAPPK NLSDKSLPPS DSWAICRIFK KTNSLSMAQK  180
ALSHPWISQL PGSMVPDMFS HGANFPQLGS PAIQFCGDKQ ELHQVSNGTN TNFSASDISP  240
TYKPINSTVS KPSQVPVPDG DLSDNFIFCT GPTKSTLDNA TSSMLSPNNP DYIAFEEPNQ  300
HYSGFSISLL PQDMQQNLST ETKEQEWETV VRNTGFPFSL PPYDAWKASS VPWDSPPCPS  360
DMSTTFSTNK CYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-53	1	174	3	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_36992

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201927.1	0.0	protein FEZ
Refseq	XP_020201928.1	0.0	protein FEZ
Swissprot	Q9FIW5	4e-93	NAC94_ARATH; Putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	4e-92	FEZ_ARATH; Protein FEZ
TrEMBL	A0A151RE22	0.0	A0A151RE22_CAJCA; Putative NAC domain-containing protein 9
STRING	GLYMA19G02580.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	2e-95	NAC domain containing protein 94

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]