PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_35648
Common NameKK1_034959
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 398aa    MW: 45282.7 Da    PI: 6.781
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_35648genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.9e-57181451129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrFhPtdee++++yL++kv ++ +++ ++i e+d++k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ k
  C.cajan_35648  18 LPPGFRFHPTDEEIITCYLTEKVLNRGFSA-TAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGK 112
                    79**************************99.88***************99999******************************************* PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                    ++lvg+kktLvfy+grapkgekt+Wvmhe+rle
  C.cajan_35648 113 SNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 145
                    ******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6215169IPR003441NAC domain
PROSITE profilePS5100558.39618169IPR003441NAC domain
PfamPF023653.7E-2919144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMMEEPVVVN KGDEPLDLPP GFRFHPTDEE IITCYLTEKV LNRGFSATAI GEADLNKCEP  60
WDLPKKAKMG EKDWYFFCQR DRKYPTGMRT NRATQSGYWK ATGKDKEIYK GKSNLVGMKK  120
TLVFYRGRAP KGEKTNWVMH EFRLEGKFAC YNLPKVAKDE WVVCKVFHKA NNTDANKRIP  180
ISPGLLRMNS FGEDLFDFSS LPPLVDPLFD QTSNKHIDND FKGNTNTITN TPSSSTKPPP  240
SEGYNYHPNF FINNNQHMLM MKPEDHRTYE FPTNNYGQNP MGISMSTSTS TSNTLQNSTS  300
PFNMFQDHYM HQGKNNSSNF IPGLDKQCKV EQFSNTNTNQ PVVSASQDTC LSNDRNTDTS  360
SVVSKQDMGR NKALYEDNLE GPSSVAALSD LECLWDDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-511617315169NO APICAL MERISTEM PROTEIN
1ut4_B4e-511617315169NO APICAL MERISTEM PROTEIN
1ut7_A4e-511617315169NO APICAL MERISTEM PROTEIN
1ut7_B4e-511617315169NO APICAL MERISTEM PROTEIN
3swm_A4e-511617318172NAC domain-containing protein 19
3swm_B4e-511617318172NAC domain-containing protein 19
3swm_C4e-511617318172NAC domain-containing protein 19
3swm_D4e-511617318172NAC domain-containing protein 19
3swp_A4e-511617318172NAC domain-containing protein 19
3swp_B4e-511617318172NAC domain-containing protein 19
3swp_C4e-511617318172NAC domain-containing protein 19
3swp_D4e-511617318172NAC domain-containing protein 19
4dul_A4e-511617315169NAC domain-containing protein 19
4dul_B4e-511617315169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_35648
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619220.0EU661922.1 Glycine max NAC domain protein (NAC23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020238425.10.0NAC domain-containing protein 87
SwissprotQ9FK441e-112NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A151RLY90.0A0A151RLY9_CAJCA; Protein CUP-SHAPED COTYLEDON 2
STRINGXP_007151811.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-113Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]