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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_31741 | ||||||||
Common Name | KK1_034626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28490.6 Da PI: 8.2519 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.1 | 3.1e-48 | 8 | 138 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Pt+eel+ +yL+++++g+++++++vi+ vdi+ vePw+Lp+ +++++++w+fFs+r++++a+g r+nr+t+sgyWkatg+ +v C.cajan_31741 8 LPPGFRFYPTEEELLAFYLHNQLQGQRHDMSRVIPVVDIHGVEPWTLPSlageLCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGTPAHV 103 79**********************************************545654445777************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 +s++++++g+kkt+vfykg+ap+g+kt+W mhey+ C.cajan_31741 104 YSSHNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYK 138 **********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-51 | 3 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.88 | 8 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-25 | 9 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSHNMEDLPP GFRFYPTEEE LLAFYLHNQL QGQRHDMSRV IPVVDIHGVE PWTLPSLAGE 60 LCRGDTEQWF FFSPRQEREA RGGRPNRTTA SGYWKATGTP AHVYSSHNKV IGMKKTMVFY 120 KGKAPTGRKT KWKMHEYKAI EHPPDQSNTT PPKLRHEFSL CRVYVISGSF RSFDRRPLEG 180 YSRAVDGDRG GASTSAQQRA PVVDGSSSSE TSHSGGGGAA LTSEAVAGSS GTNWNQSNNS 240 VEEPFWEWEQ LNWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-39 | 8 | 164 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-39 | 8 | 164 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-39 | 8 | 164 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-39 | 8 | 164 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-39 | 8 | 164 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 1e-39 | 8 | 164 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 1e-39 | 8 | 164 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 1e-39 | 8 | 164 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 1e-39 | 8 | 164 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 1e-39 | 8 | 164 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 1e-39 | 8 | 164 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 1e-39 | 8 | 164 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 1e-39 | 8 | 164 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 1e-39 | 8 | 164 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_31741 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235234 | 1e-103 | AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238156.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-89 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A151RN15 | 0.0 | A0A151RN15_CAJCA; NAC domain-containing protein 90 | ||||
STRING | GLYMA13G39160.1 | 1e-140 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-89 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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