PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_30485

Common Name

KK1_033045

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 225aa MW: 25795.1 Da PI: 9.7414

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_30485	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.2	7.1e-32	3	75	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+ewyfFs+r++ky++g r+nrat sgyWkatg+dk+++s +++++g+kk Lvfykg+ pkg ktdW+mheyrl C.cajan_30485 3 ENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYS-GSKHIGVKKALVFYKGKPPKGIKTDWIMHEYRL 75 68************************************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.346	1	102	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-39	1	102	IPR003441	NAC domain
Pfam	PF02365	1.0E-14	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
FGENEWYFFS PRERKYPNGV RPNRATVSGY WKATGTDKAI YSGSKHIGVK KALVFYKGKP 60 PKGIKTDWIM HEYRLIGSRR QANRQIGSMR LDDWVLCRIY KKKNMGKSLE AREDYPISQI 120 NIAPANNDSD QHEVMKFPRT SSLTHLLEMD YLGPISHILS DGSFNSTFDF QINTDNGGID 180 PFVKPQLVEM PNNDPYASDS GKYQVKQNST LNPTIFVNQV YDQRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-46	1	104	68	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-46	1	104	68	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-46	1	104	68	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-46	1	104	68	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-46	1	104	71	170	NAC domain-containing protein 19
3swm_B	1e-46	1	104	71	170	NAC domain-containing protein 19
3swm_C	1e-46	1	104	71	170	NAC domain-containing protein 19
3swm_D	1e-46	1	104	71	170	NAC domain-containing protein 19
3swp_A	1e-46	1	104	71	170	NAC domain-containing protein 19
3swp_B	1e-46	1	104	71	170	NAC domain-containing protein 19
3swp_C	1e-46	1	104	71	170	NAC domain-containing protein 19
3swp_D	1e-46	1	104	71	170	NAC domain-containing protein 19
4dul_A	1e-46	1	104	68	167	NAC domain-containing protein 19
4dul_B	1e-46	1	104	68	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_30485

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ028769	0.0	DQ028769.1 Glycine max NAC domain protein NAC1 (NAC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020236754.1	1e-170	NAC domain-containing protein 1
Swissprot	K4BWV2	9e-78	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A151RS82	1e-168	A0A151RS82_CAJCA; NAC domain-containing protein 29 (Fragment)
STRING	GLYMA01G06150.1	1e-148	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4103	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-76	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]