PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_28250
Common NameKK1_028509
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 214aa    MW: 24360.4 Da    PI: 8.3332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_28250genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18115165255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp+     +r++lg+f+t+ +Aaka++ a+ +++g
  C.cajan_28250 115 RYRGVRRRP-WGKFAAEIRDPTRK--GARVWLGTFDTEIDAAKAYDCAAFRMRG 165
                    8********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.99E-30114173No hitNo description
PROSITE profilePS5103224.553115173IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22115174IPR016177DNA-binding domain
SMARTSM003802.7E-35115179IPR001471AP2/ERF domain
PfamPF008472.0E-13115165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31115174IPR001471AP2/ERF domain
PRINTSPR003674.7E-13116127IPR001471AP2/ERF domain
PRINTSPR003674.7E-13155175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTTAEETSNL DLIRQHLLGE NISDSFLTNL HPVKLEHPSS PEFDFTSYIS DHSSFFTFLE  60
GYDLVADMEF VDHKKALKST GAITTPSKEP NKCNSPEPIS EGKAKKSSEY DEAKRYRGVR  120
RRPWGKFAAE IRDPTRKGAR VWLGTFDTEI DAAKAYDCAA FRMRGQKAIL NFPLEAGRSD  180
PKPNCCGRKR RRESHDYELK LPQQVHVQFH HGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28112174264ATERF1
3gcc_A2e-28112174264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_28250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894821e-106BT089482.1 Soybean clone JCVI-FLGm-2G11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232881.11e-161ethylene-responsive transcription factor ERF107
TrEMBLA0A151S4I91e-160A0A151S4I9_CAJCA; Ethylene-responsive transcription factor ERF106 family
STRINGXP_007145470.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-40ERF family protein