PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_26764
Common NameKK1_027948
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 358aa    MW: 41067.4 Da    PI: 8.9195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_26764genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.3e-5391401128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeel+ +yL+kkv++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++++ 
  C.cajan_26764   9 LPPGFRFHPTDEELILHYLRKKVASIPLPV-SIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKNIVASl 103
                    79****************************.89***************988899****************************************99 PP

            NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +e+ g+kk Lvfy+g+ pkg+kt+W+mheyrl
  C.cajan_26764 104 vrggVREHFGVKKALVFYEGKPPKGVKTNWIMHEYRL 140
                    98776677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-646167IPR003441NAC domain
PROSITE profilePS5100561.6379167IPR003441NAC domain
PfamPF023652.2E-2710140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGTPQANNLP PGFRFHPTDE ELILHYLRKK VASIPLPVSI IAEVDIYKFD PWELPAKAAF  60
GEKEWYFFSP RDRKYPNGAR PNRAAGSGYW KATGTDKNIV ASLVRGGVRE HFGVKKALVF  120
YEGKPPKGVK TNWIMHEYRL VHSNRPISLK ETSMRLDDWV LCRIYKKSKQ VASSATEAAT  180
VQVNEQDEAK EDENKTKAPI SKISTLVPLP PLMSQKSLSF SNLLDATDYS MLSTILSENY  240
HYSNYTTPSD EGLFNCENLD HETPQNQNYY CNNNNSNSSY LFQKNPSVLP HMENMTRPKH  300
QLSNIDEDMV YPSKKYHSSS CNFPNTNLQN HNQQRNFMFK QPFISQQLLL GPQYLPFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-73816716165NO APICAL MERISTEM PROTEIN
1ut4_B3e-73816716165NO APICAL MERISTEM PROTEIN
1ut7_A3e-73816716165NO APICAL MERISTEM PROTEIN
1ut7_B3e-73816716165NO APICAL MERISTEM PROTEIN
3swm_A4e-73816719168NAC domain-containing protein 19
3swm_B4e-73816719168NAC domain-containing protein 19
3swm_C4e-73816719168NAC domain-containing protein 19
3swm_D4e-73816719168NAC domain-containing protein 19
3swp_A4e-73816719168NAC domain-containing protein 19
3swp_B4e-73816719168NAC domain-containing protein 19
3swp_C4e-73816719168NAC domain-containing protein 19
3swp_D4e-73816719168NAC domain-containing protein 19
4dul_A3e-73816716165NAC domain-containing protein 19
4dul_B3e-73816716165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_26764
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619101e-125EU661910.1 Glycine max NAC domain protein (NAC8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020232458.10.0NAC domain-containing protein 1
SwissprotQ84TD68e-97NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A151S5Z70.0A0A151S5Z7_CAJCA; NAC domain-containing protein 29
STRINGXP_007151816.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-98NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]