PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_23928

Common Name

KK1_024727

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 279aa MW: 31885 Da PI: 8.4813

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_23928	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.5	2.8e-32	48	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i+ ++P++Lp v ++ +fF++ +k+y+tg+rk+r+++ + + C.cajan_23928 48 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdedgsETR 141 799*********9.99*99984443333332222333336******.555555677**************744446555788 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 W++tgk+++v+ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l C.cajan_23928 142 WHKTGKTRPVFI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 188 ********.999*******5444788889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-37	43	207	IPR003441	NAC domain
PROSITE profile	PS51005	32.038	48	207	IPR003441	NAC domain
Pfam	PF02365	1.4E-15	49	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MTQCSYPENN HSIIVERHKD SLIRTCPTCG HHIKCQEQAA GIHDLPGLPA GVKFDPTDQE 60 ILEHLEAKVR SDIHKLHPLI DEFIPTLEGE NGICCTHPEK LPGVGKDGLI RHFFHRPSKA 120 YTTGTRKRRK VHTDEDGSET RWHKTGKTRP VFISGKLKGY KKILVLYTNY RKQRKPEKTN 180 WVMHQYHLGN NEEEKEGELV VSKVFYQTQP RQCGSLLKDS YPAKLNGEGV HEITNHKNTG 240 FVEYYNNSFV SFDQGDQHRS STAQVISHFP VHDGATFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_23928

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020229460.1	0.0	NAC domain-containing protein 73
Refseq	XP_029129599.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-115	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A151SF00	0.0	A0A151SF00_CAJCA; NAC domain-containing protein 8
STRING	GLYMA12G33460.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-105	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]