PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_16064

Common Name

KK1_016532

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Nin-like

Protein Properties

Length: 909aa MW: 100185 Da PI: 5.9689

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_16064	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.4	1.4e-28	550	601	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl+ l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ C.cajan_16064 550 AEKSISLDILQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 601 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.177	538	621	IPR003035	RWP-RK domain
Pfam	PF02042	8.0E-25	554	601	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-22	808	894	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-25	809	890	No hit	No description
PROSITE profile	PS51745	22.5	809	891	IPR000270	PB1 domain
SMART	SM00666	2.4E-25	809	891	IPR000270	PB1 domain
Pfam	PF00564	3.5E-18	810	890	IPR000270	PB1 domain
CDD	cd06407	8.68E-31	810	890	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 909 aa Download sequence Send to blast
MDFDIGLESP WPLDHVSLVS NPMSPFLLST ISEQPFSPVW AFSDVEDDRQ IRIAASGNTN 60 TTNENPVEND ANKKTVSPLV ALPPSENPDG YCLIKERMTQ ALRHFKELTE QNVLAQVWAP 120 VRNGNRYALT TSGQPFVLDP HSNGLHQYRT VSLMYMFSVD GENDEIQGLP GRVFQHKIPE 180 WTPNVQYYSS KEYQRLNHAQ HYNVRGTLAL PVFEPAGQSC VAVLELIMTS QKINYAPEVD 240 KICKALEAVN LRSSEILEHP YNQICNEDRQ YALAEILEIL TVVCETHSLP LAQTWVPCKH 300 RSVLAHGGGV KKSCSSFDGC CMGQVCMSIT EVAFYVIDAR TWGFHEACVE HHLQQGQGVA 360 GRAFLSHKMC FCGNITQFCK TEYPLVHYAI MFGLTSCFAV CLQSSHTGND EYVLEFFLPP 420 MITDFNEQKS LLGSILATMK PHFQSFKIAA GVELEENGSV EIVEAINERV HLRFESIPIT 480 QSSKSPPRHA LPNMGEALPP EPSEQQIMAY CDDINDGGSL GDNAGGHIDQ NTLLETKTKK 540 KPSERKRGKA EKSISLDILQ HYFTGSLKDA AKSLGVCPTT MKRICRQHGI SRWPSRKIKK 600 VNRSLSKLKC VIESVHGAEG AFGLNSLSTS SLPIAAGSFS EPSTSNKQIE MGEQFLGART 660 QSPEKLINDK VGTIQEIGTK GSNKLRTGSG SSEGSANPTP HGSCQGSPPN EISPTKDIFI 720 AGNNEQCLVL RGSLESTLLS TRTSTPNRPT AYPMPNIVDT TEPQVPFVGQ LLEGAGSSKD 780 LRNLCPSADA VLEDQVPEAC RMNPQRVKSV TIKATYKEDI IRFKVSLDCG IVELKEEIAK 840 RLKLEVVTFD IKYLDDDHEW VLIACDADLL ECMDISSSSG SNIIRLVVHD ILSILGSSCE 900 SSGDWKGCI

Sequence ? help Back to Top

Protein Sequence Length: 909 aa Download sequence Send to blast

MDFDIGLESP WPLDHVSLVS NPMSPFLLST ISEQPFSPVW AFSDVEDDRQ IRIAASGNTN  60
TTNENPVEND ANKKTVSPLV ALPPSENPDG YCLIKERMTQ ALRHFKELTE QNVLAQVWAP  120
VRNGNRYALT TSGQPFVLDP HSNGLHQYRT VSLMYMFSVD GENDEIQGLP GRVFQHKIPE  180
WTPNVQYYSS KEYQRLNHAQ HYNVRGTLAL PVFEPAGQSC VAVLELIMTS QKINYAPEVD  240
KICKALEAVN LRSSEILEHP YNQICNEDRQ YALAEILEIL TVVCETHSLP LAQTWVPCKH  300
RSVLAHGGGV KKSCSSFDGC CMGQVCMSIT EVAFYVIDAR TWGFHEACVE HHLQQGQGVA  360
GRAFLSHKMC FCGNITQFCK TEYPLVHYAI MFGLTSCFAV CLQSSHTGND EYVLEFFLPP  420
MITDFNEQKS LLGSILATMK PHFQSFKIAA GVELEENGSV EIVEAINERV HLRFESIPIT  480
QSSKSPPRHA LPNMGEALPP EPSEQQIMAY CDDINDGGSL GDNAGGHIDQ NTLLETKTKK  540
KPSERKRGKA EKSISLDILQ HYFTGSLKDA AKSLGVCPTT MKRICRQHGI SRWPSRKIKK  600
VNRSLSKLKC VIESVHGAEG AFGLNSLSTS SLPIAAGSFS EPSTSNKQIE MGEQFLGART  660
QSPEKLINDK VGTIQEIGTK GSNKLRTGSG SSEGSANPTP HGSCQGSPPN EISPTKDIFI  720
AGNNEQCLVL RGSLESTLLS TRTSTPNRPT AYPMPNIVDT TEPQVPFVGQ LLEGAGSSKD  780
LRNLCPSADA VLEDQVPEAC RMNPQRVKSV TIKATYKEDI IRFKVSLDCG IVELKEEIAK  840
RLKLEVVTFD IKYLDDDHEW VLIACDADLL ECMDISSSSG SNIIRLVVHD ILSILGSSCE  900
SSGDWKGCI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_16064

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020221300.1	0.0	protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A151T4P9	0.0	A0A151T4P9_CAJCA; Uncharacterized protein
STRING	GLYMA09G25230.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]