PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_14476

Common Name

KK1_014906

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 304aa MW: 33010 Da PI: 8.0137

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_14476	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100	2.3e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q++ C.cajan_14476 4 SCNGCRVLRKGCSDNCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAA 99 6*********************************************************************************************** PP DUF260 92 aelallke 99 +e +l ++ C.cajan_14476 100 VENVLKGA 107 99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	2.3E-99	1	303	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.719	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.0E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLKGAPIT PITSEAAASG 120 RGPPLKAYDI RHVSKDENSA ASNETQQQQQ RVKTRSRVKR PAAAATAKPK STHENNKESG 180 SGEPGFVVTS EWTEEALNRS GSHDSSLSHQ SEAANAVESE SMVSVETAET SNLFRDEPES 240 HPKRVDRSEE GGEHVGLELT LGFEPASRAV HVVPVKKRRI ELKEFSGSAQ SGSCKMELGL 300 EYSA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_14476

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020223716.1	0.0	LOB domain-containing protein 41
Swissprot	Q9M886	1e-106	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A151SXE6	0.0	A0A151SXE6_CAJCA; LOB domain-containing protein 41
STRING	XP_007139150.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-100	LOB domain-containing protein 41