PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_09296
Common NameKK1_009557
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 514aa    MW: 57063.2 Da    PI: 6.0612
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_09296genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.21.4e-084334711854
                    HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  C.cajan_09296 433 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 471
                    5887779******************************88 PP
2BELL75.77.3e-25305374171
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                    +r++ ++kka+Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ +++ ++Al++iS  +r L+++i++ 
  C.cajan_09296 305 QRHATESKKAQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDP-QIHSHFALQTISILYRDLRERISNY 374
                    68999****************************************.**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.9E-24229373IPR006563POX domain
PfamPF075265.3E-27235372IPR006563POX domain
PROSITE profilePS5007111.078412475IPR001356Homeobox domain
SMARTSM003896.9E-6415479IPR001356Homeobox domain
CDDcd000866.07E-11415476No hitNo description
SuperFamilySSF466892.05E-15417484IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-26418481IPR009057Homeodomain-like
PfamPF059208.0E-15432471IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MYIAGRDATV TDEISQHSTS NPLIQCYSLD LNNQTNIING IPMLSGEQGE LISNVHADVC  60
FINPSIIANS SPLVASQGKT IVADASNPME NSELQENLVG GMPITPSSLA AILAARIGLE  120
ENLENSEALP PALCSMGPLA PFFNILHGSS NPLAAAFEDC GYNEVPSKWN ANNKELSLSL  180
ASSTTAGQCS EVSCSNVTPC MNGTMSGLEQ ASCSSSRELS MNLGGNKYVQ FSPEVLESRY  240
LVGIQEILAQ IARYSFENLE QLNYSAAANR SGGNKSTSAF PLKRRILIDH NANSVYETHA  300
ESPLQRHATE SKKAQLLTLL QLVDNRYSQC LDEIHTVVSA FHAATELDPQ IHSHFALQTI  360
SILYRDLRER ISNYILAMGS SFDNSFSEEN EWSVETSFLQ KQWALQQLKR KDQLWRPQRG  420
LPERSVSVLR AWMFQNFLHP YPKDAEKHLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM  480
YAEMNKRKAC RNEEGLQSSH GNRISISNQR FNVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14421479563Homeobox protein Meis2
3k2a_B1e-14421479563Homeobox protein Meis2
4xrm_A1e-14421479563Homeobox protein Meis2
4xrm_B1e-14421479563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_09296
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945590.0BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213435.10.0homeobox protein ATH1 isoform X1
RefseqXP_020213436.10.0homeobox protein ATH1 isoform X1
RefseqXP_029126759.10.0homeobox protein ATH1 isoform X1
SwissprotP487311e-107ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A151TTL30.0A0A151TTL3_CAJCA; Homeobox protein ATH1
STRINGGLYMA04G05361.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-103homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]