PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_04121

Common Name

KK1_004221

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 202aa MW: 23661.5 Da PI: 4.7079

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_04121	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.6	6.4e-33	8	126	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGf F+Ptdeelv ++L k++ +++ ++i+e++ +++Pw+L+ k+ + +++yfFsk + +nr+t++gyWk+ g ++++ls+ C.cajan_04121 8 LPPGFFFSPTDEELVLHFLFCKASLIPCHP-NIIPELHSSHLDPWELNGKALFSGNQYYFFSKVN--------ENRTTENGYWKEIGMTEPILSTV 94 79***********************999.89**********966667889999875........5899***************9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kk Lvf+ g+ap+ ++t+Wvm+ey++ C.cajan_04121 95 DKKVGMKKYLVFHIGEAPQDTETNWVMQEYHI 126 ****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-42	5	160	IPR003441	NAC domain
PROSITE profile	PS51005	38.897	8	160	IPR003441	NAC domain
Pfam	PF02365	5.4E-21	9	126	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MEDGSINLPP GFFFSPTDEE LVLHFLFCKA SLIPCHPNII PELHSSHLDP WELNGKALFS 60 GNQYYFFSKV NENRTTENGY WKEIGMTEPI LSTVDKKVGM KKYLVFHIGE APQDTETNWV 120 MQEYHICSSG FDMASYRSAR RRRKHDQSWS KWVLCRVYEK RRCEEGVKCY SDDEDENGSE 180 LSWLDEFYLR LDDDLEEIGM SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-35	6	165	18	173	NAC domain-containing protein 19
3swm_B	7e-35	6	165	18	173	NAC domain-containing protein 19
3swm_C	7e-35	6	165	18	173	NAC domain-containing protein 19
3swm_D	7e-35	6	165	18	173	NAC domain-containing protein 19
3swp_A	7e-35	6	165	18	173	NAC domain-containing protein 19
3swp_B	7e-35	6	165	18	173	NAC domain-containing protein 19
3swp_C	7e-35	6	165	18	173	NAC domain-containing protein 19
3swp_D	7e-35	6	165	18	173	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_04121

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031209	0.0	KT031209.1 Glycine max clone HN_CCL_4 NAC transcription factor (Glyma04g38990.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020224898.1	1e-152	NAC domain-containing protein 104
Swissprot	Q8GWK6	4e-59	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A151ST19	1e-150	A0A151ST19_CAJCA; NAC domain-containing protein 68
STRING	GLYMA04G38990.1	1e-118	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-61	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]