PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g001710.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 324aa MW: 38315.9 Da PI: 6.5876

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g001710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.8	1.6e-24	50	132	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf rsp+qCk+kw+nl +ryk+++++e + ++++p+ ++++ Csa20g001710.1 50 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSPEQCKSKWKNLVTRYKACETTEPDA---IRQQFPFHNEIQ 132 7*******************************************************************985...555788888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0039	47	109	IPR001005	SANT/Myb domain
CDD	cd12203	8.17E-22	49	111	No hit	No description
Pfam	PF13837	1.6E-19	50	133	No hit	No description
PROSITE profile	PS50090	8.002	51	107	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MDRRNPFQHH LHHHQLHHHH LIQQQQLPPP SQSTMAAMDP GGGGGERIPQ WSIEETKELL 60 GIREELDQTF METKRNKLLW EVVAAKMADK GFVRSPEQCK SKWKNLVTRY KACETTEPDA 120 IRQQFPFHNE IQSIFAARMQ RMLWSDPTEP STSSKRKHNQ FSSDDDEEEE EEVDEPNQDI 180 NEELLSLVET QKKETEVITT STSANPRKRA KKGKGVTKAE TAAGSTIKEV LEEFMRQTVK 240 MEKEWRDAWE MKEREREKRE KEWRKRMAEL EEERAAAERR WMEREEERRM REEVRAQKRD 300 TLIDALLNKL NRDHNDHGRN QGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g001710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY271677	0.0	AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBank	BT028926	0.0	BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010490572.1	0.0	PREDICTED: trihelix transcription factor GT-3a
Swissprot	Q9SDW0	1e-150	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A398A5Y0	1e-148	A0A398A5Y0_BRACM; Uncharacterized protein
STRING	XP_010490572.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	1e-135	Trihelix family protein