PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g036390.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 432aa MW: 46420 Da PI: 8.9041

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g036390.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8.3e-39	135	194	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+st+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s Csa18g036390.1 135 DHPQKCPRCESTHTKFCYYNNYSLAQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 194 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-34	123	188	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-32	136	192	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.602	138	192	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	140	176	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
SNPEEKKGPL LASFLFTSQP PNSSLPSHLI SLLLLLPLSL SLYFVQRLLL KVSLSPKLNK 60 QTKHKMGLTS LQVCMDSDWL QEAESSGGSM LDSSTNSPSA ADILAACSTR PQASAVAVAA 120 AALMDGGRRL RPPHDHPQKC PRCESTHTKF CYYNNYSLAQ PRYFCKTCRR YWTKGGTLRN 180 IPVGGGCRKN KKPSSPNSSS STSSGKKPSN IVATNTTDLM ALAQTYQNSP LGFSHFGGMM 240 GSYSTPEHSN VGFLESKYGG LVPQSPRPID FLDSKFDLMG VNNDNLVMVD HGSNRDYHHH 300 HHHMGLHHGL GLNNNNGGFN GISPGSNGNG GGLMDISACQ RLMLSSYDHQ HYNHQEDHQR 360 VTTITDVKPN PKLLSLDWQQ DQCYSNGGGN GGVGKSDGGG YGGGGYINGL GSSWNGLMNG 420 YGSSTKTNSL V*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

SNPEEKKGPL LASFLFTSQP PNSSLPSHLI SLLLLLPLSL SLYFVQRLLL KVSLSPKLNK  60
QTKHKMGLTS LQVCMDSDWL QEAESSGGSM LDSSTNSPSA ADILAACSTR PQASAVAVAA  120
AALMDGGRRL RPPHDHPQKC PRCESTHTKF CYYNNYSLAQ PRYFCKTCRR YWTKGGTLRN  180
IPVGGGCRKN KKPSSPNSSS STSSGKKPSN IVATNTTDLM ALAQTYQNSP LGFSHFGGMM  240
GSYSTPEHSN VGFLESKYGG LVPQSPRPID FLDSKFDLMG VNNDNLVMVD HGSNRDYHHH  300
HHHMGLHHGL GLNNNNGGFN GISPGSNGNG GGLMDISACQ RLMLSSYDHQ HYNHQEDHQR  360
VTTITDVKPN PKLLSLDWQQ DQCYSNGGGN GGVGKSDGGG YGGGGYINGL GSSWNGLMNG  420
YGSSTKTNSL V*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g036390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228992	0.0	AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484008.1	0.0	PREDICTED: dof zinc finger protein DOF5.6-like
Swissprot	Q9FM03	1e-174	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	D7MNC9	0.0	D7MNC9_ARALL; Uncharacterized protein
STRING	XP_010484008.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-169	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]