PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g034790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26041.3 Da    PI: 8.7088
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g034790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.7e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++gkly+++s
  Csa18g034790.1  9 KRIENITSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGKLYDFAS 59
                    79***********************************************86 PP
2K-box53.78.9e-19841581084
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      e+  + l++e++ + k+i  Lq + R+l+G+dL+s+s+ eL+++  qLeksl+ +Rs+K ++  +++e+l++  
  Csa18g034790.1  84 REQYVQDLKNEITVMVKRIGLLQLQCRKLMGQDLDSCSVDELKEITIQLEKSLTVVRSRKAKINEDEVEKLKEEI 158
                     678899****************************************************************99763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.922161IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-29323IPR002100Transcription factor, MADS-box
CDDcd002651.16E-39369No hitNo description
SuperFamilySSF554555.36E-31373IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1788172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.29188183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVRKKIEIKR IENITSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGKLYDFASS  60
NMQKMMERYG IYKREYFSAE IFQREQYVQD LKNEITVMVK RIGLLQLQCR KLMGQDLDSC  120
SVDELKEITI QLEKSLTVVR SRKAKINEDE VEKLKEEIEG ERELLNERPR LHLHEMFEEK  180
PLWMQSRSLV SENSAAASCV CVNMNTSDVE TDLFIGLPQS RML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-19372271Myocyte-specific enhancer factor 2A
3mu6_B2e-19372271Myocyte-specific enhancer factor 2A
3mu6_C2e-19372271Myocyte-specific enhancer factor 2A
3mu6_D2e-19372271Myocyte-specific enhancer factor 2A
5f28_A4e-19172172MEF2C
5f28_B4e-19172172MEF2C
5f28_C4e-19172172MEF2C
5f28_D4e-19172172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g034790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325421e-50AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281451.11e-124MADS-box protein AGL71
SwissprotQ9FLH52e-77AGL72_ARATH; MADS-box protein AGL72
TrEMBLR0GCF91e-122R0GCF9_9BRAS; Uncharacterized protein
STRINGXP_006281451.11e-123(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.25e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]