PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g025590.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 351aa MW: 38067.5 Da PI: 6.5006

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g025590.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	229.6	5.4e-71	114	278	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrel......ks 80 r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrer +qlaa+ +k+ ++a + +r++e+ ++ Csa17g025590.1 114 RQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERLAQLAALPAKRIRDAtssgggdddgD---DDRENEKngggddSC 205 7899***************************************************99999888878899765431...222222245677789 PP DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 sal++t++++a+s+ lets++P+e+ss+avfrc+rvss+dd++ee+aYqtavsigGhvfkGiLydqG+++ Csa17g025590.1 206 GGGSALACTRVVNANSS-GLETSHMPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 278 999*******876.99*************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.8E-63	117	277	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-27	119	161	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-26	228	276	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MAGLFYLGGR DHNKQDHQHQ DKDHNEDKSN NYLYLYKDEI YNNNKGFEIW PPQYFQQQQN 60 HVAAPTNLYS FGMVPSGGGS NNNNRSTNRS LYFNVVSDHE APVRSSTGGF TVTRQGNMNC 120 QDCGNQAKKD CPHMRCRTCC KSRGFDCQTH VKSTWVPAAK RRERLAQLAA LPAKRIRDAT 180 SSGGGDDDGD DDRENEKNGG GDDSCGGGSA LACTRVVNAN SSGLETSHMP PEISSPAVFR 240 CMRVSSIDDE DEEYAYQTAV SIGGHVFKGI LYDQGPSDHH RYSSNLTADT SQHHLNLLDS 300 TASAATTTAV TVVNSNNGSI DTSSLYTAAT AAPFNAFVAA GTPFFAPPRS *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MAGLFYLGGR DHNKQDHQHQ DKDHNEDKSN NYLYLYKDEI YNNNKGFEIW PPQYFQQQQN  60
HVAAPTNLYS FGMVPSGGGS NNNNRSTNRS LYFNVVSDHE APVRSSTGGF TVTRQGNMNC  120
QDCGNQAKKD CPHMRCRTCC KSRGFDCQTH VKSTWVPAAK RRERLAQLAA LPAKRIRDAT  180
SSGGGDDDGD DDRENEKNGG GDDSCGGGSA LACTRVVNAN SSGLETSHMP PEISSPAVFR  240
CMRVSSIDDE DEEYAYQTAV SIGGHVFKGI LYDQGPSDHH RYSSNLTADT SQHHLNLLDS  300
TASAATTTAV TVVNSNNGSI DTSSLYTAAT AAPFNAFVAA GTPFFAPPRS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g025590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY924676	0.0	AY924676.1 Arabidopsis thaliana hypothetical protein (At1g19790) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010477201.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Refseq	XP_010477202.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Refseq	XP_019095023.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Swissprot	Q9FXH7	0.0	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A178VZW5	0.0	A0A178VZW5_ARATH; SRS7
STRING	XP_010477201.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-171	SHI-related sequence 7

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]