PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g042220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MIKC_MADS

Protein Properties

Length: 369aa MW: 42295.7 Da PI: 4.7616

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g042220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.2	3.3e-26	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+++fs++++l +s Csa16g042220.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALLMFSPSDRLSLFS 58 79******************************************998776 PP
2	K-box	13.5	3e-06	121	191	9	79
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +++ e+l++e+ kL+++++ ++e+R++ + +++e + e+qL + l++i ++++++l + ++ Csa16g042220.1 121 AINSDVEELEHEVYKLQQQLHIAEEELRKYEPDPNRFTTVEEYETCEKQLTDTLTRIGQRREHILNDLSSY 191 55678999******************************************************999876555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.9E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.805	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.02E-28	2	81	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.06E-34	2	75	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-24	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-24	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK 60 TRIEDVFSRY INLSDQEREN ALVFPDHSRR PDFQSKEYLL RTLQQLKTEN DIALQLTNPA 120 AINSDVEELE HEVYKLQQQL HIAEEELRKY EPDPNRFTTV EEYETCEKQL TDTLTRIGQR 180 REHILNDLSS YEASAIQQQQ NMGGPFVTDV VGGWLSENGP NQAHLFDASA HSATYETLLQ 240 GSSSSSNQNN IMGESNVSNH NGDMFQEWVQ TYNSTTGHNP SALFPPMQQQ QHQHQHGLVG 300 SSNVEEIEIP VMKEEAQADH EVSDYHIMKR ETQADHEVSD DYHIMKREAQ ADHEVSDYDI 360 RMPQLSSQ*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALLMFSP SDRLSLFSGK  60
TRIEDVFSRY INLSDQEREN ALVFPDHSRR PDFQSKEYLL RTLQQLKTEN DIALQLTNPA  120
AINSDVEELE HEVYKLQQQL HIAEEELRKY EPDPNRFTTV EEYETCEKQL TDTLTRIGQR  180
REHILNDLSS YEASAIQQQQ NMGGPFVTDV VGGWLSENGP NQAHLFDASA HSATYETLLQ  240
GSSSSSNQNN IMGESNVSNH NGDMFQEWVQ TYNSTTGHNP SALFPPMQQQ QHQHQHGLVG  300
SSNVEEIEIP VMKEEAQADH EVSDYHIMKR ETQADHEVSD DYHIMKREAQ ADHEVSDYDI  360
RMPQLSSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	1e-17	1	90	1	91	MEF2 CHIMERA
6bz1_B	1e-17	1	90	1	91	MEF2 CHIMERA
6bz1_C	1e-17	1	90	1	91	MEF2 CHIMERA
6bz1_D	1e-17	1	90	1	91	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g042220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446441	0.0	DQ446441.1 Arabidopsis thaliana clone pENTR221-At1g77980 MADS-box family protein (At1g77980) mRNA, complete cds.
GenBank	DQ652940	0.0	DQ652940.1 Arabidopsis thaliana clone 0000013056_0000009401 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010471996.1	0.0	PREDICTED: agamous-like MADS-box protein AGL66
Swissprot	Q1PFC2	0.0	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	D7KV61	0.0	D7KV61_ARALL; MADS-box family protein
TrEMBL	R0HW85	0.0	R0HW85_9BRAS; Uncharacterized protein
STRING	XP_010471996.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	0.0	AGAMOUS-like 66

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]