PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g039470.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 350aa MW: 38812.1 Da PI: 6.9243

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g039470.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.7	1.8e-69	122	288	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsa 85 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakr+er +ql ++++++++s++++++kr re + sa Csa16g039470.1 122 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRQERLAQLDSLQHHSTSSRETQNTKRLREAsggdnsdgkdhSGGGGSA 216 7899***********************************************************999999998888888888877766777899 PP DUF702 86 lsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 l++t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG+++ Csa16g039470.1 217 LATTRVVNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 288 **********998876***************98535567*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.3E-63	125	287	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.3E-28	127	169	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-26	236	286	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MAGFFYLGGR DNNNNNNNNN NNKQDHHQVD KDHHHQDKSN YLYLYKDEIY NNNKGFEIWP 60 PQYFQQQEQP QQQQQHASAP ANFYSFGMVP SGSSSNNNNN RSRSLYFNVV SDHEPGGFTV 120 TRQGGMNCQD CGNQAKKDCP HMRCRTCCKS RGFHCQTHVK STWVPAAKRQ ERLAQLDSLQ 180 HHSTSSRETQ NTKRLREASG GDNSDGKDHS GGGGSALATT RVVNANSNSG LEVSQHLPPE 240 VNSPAVFRCV RVSSIEEDED DQEYAYQTAV NIGGHVFKGI LYDQGPDQDH HHHLNLLAST 300 ATTTNVEETA TKAVAGNNNN GLMLDPSSLY PAQLNSFIAG TPFFTPPRS*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MAGFFYLGGR DNNNNNNNNN NNKQDHHQVD KDHHHQDKSN YLYLYKDEIY NNNKGFEIWP  60
PQYFQQQEQP QQQQQHASAP ANFYSFGMVP SGSSSNNNNN RSRSLYFNVV SDHEPGGFTV  120
TRQGGMNCQD CGNQAKKDCP HMRCRTCCKS RGFHCQTHVK STWVPAAKRQ ERLAQLDSLQ  180
HHSTSSRETQ NTKRLREASG GDNSDGKDHS GGGGSALATT RVVNANSNSG LEVSQHLPPE  240
VNSPAVFRCV RVSSIEEDED DQEYAYQTAV NIGGHVFKGI LYDQGPDQDH HHHLNLLAST  300
ATTTNVEETA TKAVAGNNNN GLMLDPSSLY PAQLNSFIAG TPFFTPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g039470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY800620	0.0	AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBank	AY924730	0.0	AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010471665.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A178W9B5	0.0	A0A178W9B5_ARATH; SRS5
STRING	XP_010471665.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-162	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]