PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g052690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 307aa    MW: 34685.8 Da    PI: 9.7455
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g052690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.48.3e-2359139286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+l+Lie  +e++ +++rg lk ++Wee++ ++ ++ g+ rs++qC++k+e+l+kr++ ++++++       s +p+++q+e
  Csa15g052690.1  59 WTHDETLLLIESFKEKWYAIGRGPLKSTHWEEIAVAVsARSGVDRSSTQCRHKIEKLRKRFRSERQSMGPI-----SIWPFYNQME 139
                     ***********************************998899****************************84.....68*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.52859116IPR017877Myb-like domain
PfamPF138371.5E-1959141No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MATPSPTSSP PSDSNPNSAA TPPHQQPTDP SSPPPSHMTV VALAATTSSV ARKTQPVLWT  60
HDETLLLIES FKEKWYAIGR GPLKSTHWEE IAVAVSARSG VDRSSTQCRH KIEKLRKRFR  120
SERQSMGPIS IWPFYNQMEE MDSNPAPISA RPLTRLPPNS NSHYQDDEEE DQEEEEDNYE  180
KEEEDERQSK SRSINYILRR PGTVNRFAGV GGGLLSWGQR ERSTKRKRNN DGGDGGERRR  240
KGARAVAAEI RAFAERVMVM EKKKMEFAKE TVRLRKEMEI KRINLIKTSQ AQLLQFLNSS  300
FDSSSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225240RKRNNDGGDGGERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g052690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466922.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLR0I4461e-168R0I446_9BRAS; Uncharacterized protein
STRINGXP_010466922.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-121Trihelix family protein