PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g032450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 394aa    MW: 43547.1 Da    PI: 6.0378
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g032450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-07648339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    e+kC+++   ++ ++C+++   lC +C ++ H+       Ht+
  Csa15g032450.1  6 EPKCDHCATAQAVIYCKSDLAKLCLNCDVHVHSAnplshrHTR 48
                    89*******99********************966888855655 PP
2CCT62.21.7e-21339382144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a+lRYkeKr +R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Csa15g032450.1 339 RDQAKLRYKEKRLKRTFGKQIRYASRKARADTRKRVKGRFVKAG 382
                     899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.617451IPR000315B-box-type zinc finger
SMARTSM003363.1E-9451IPR000315B-box-type zinc finger
PfamPF006431.5E-5648IPR000315B-box-type zinc finger
CDDcd000211.53E-5751No hitNo description
PfamPF062034.7E-16339381IPR010402CCT domain
PROSITE profilePS5101714.555339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSLSMEPKCD HCATAQAVIY CKSDLAKLCL NCDVHVHSAN PLSHRHTRSL ICQKCYSQPA  60
IIRCLDDKVS YCQGCHWHAS NCSVLGHRLQ SLNPFSGCPS PTDFVRMWSS ILEPSVSGLV  120
SPFVGSFPLN GPNNDVFGMA KFNELDGLIA SSYSMVPHNI SYTQNLSDQS SFFCMESKGC  180
PDLFLELEED LCEELNLDNA PLNFDVGDDI IGCSSEEHIE PDHTVPNCLL IDKDNTTVTA  240
RASNFTIIDK ALETASPGQQ DYTSYQSGPF QMNINTTGLA LPPSPVLFGQ IHPTMSLTIS  300
NVTGETSAAD YQDCGMTPGF IMSEAPWESN LEHRCPQARD QAKLRYKEKR LKRTFGKQIR  360
YASRKARADT RKRVKGRFVK AGDNYDYDPS SPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g032450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0007391e-132AP000739.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MEK6.
GenBankCP0026861e-132CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466454.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 12-like isoform X1
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLV4M5W20.0V4M5W2_EUTSA; Uncharacterized protein
STRINGXP_010466454.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]