PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa15g012510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 601aa    MW: 67118.7 Da    PI: 8.843
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa15g012510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.94.9e-22265374186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 
                     +Wt+ +v++Li a+ +++++ + +                        +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ 
  Csa15g012510.1 265 KWTDTMVRLLIMAVFYIGDEAGLNDpidvkkkssggggggggggggmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGi 359
                     7**************888888865445556677888899999999999**********************************************8 PP

        trihelix  72 tsessstcpyfdqle 86 
                     +++++++  ++++++
  Csa15g012510.1 360 ACRVVENQGLLESMD 374
                     9*******9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-19263400No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MPQNPQNPTV HQFQHPHPYT NSNDQQTQPP IKQPLYPPYP SSAPPSKPKQ LSPISGGCNG  60
DDEDRGSGSG SGCNPEDSAG TDGKRKLSQW HRMKWTDTMV RLLIMAVFYI GDEAGLNDPI  120
DVKKKSSGGG GGGGGGGGGM LQKKGKWKVF RVLMESNVMF SGFSPRMLSL EMPQNPQNPT  180
VHQFQHPHPY TNSNDQQTQP PIKQPLYPPY PSSAPPSKPK QLSPISGGCN GDDEDRGSGS  240
GSGCNPEDSA GTDGKRKLSQ WHRMKWTDTM VRLLIMAVFY IGDEAGLNDP IDVKKKSSGG  300
GGGGGGGGGG MLQKKGKWKS VSRAMVEKGF SVSPQQCEDK FNDLNKRYKR VNDILGKGIA  360
CRVVENQGLL ESMDHLTPKL KDEVKKLLNS KHLFFREMCA YHNSCGHLGG HDQQQPPQQN  420
PVSVPVPVQL NCFHAAEAGK MARTAERGEV EVESDMAEDS ESESEMEETE EEEEEETKKK  480
RRKVLTTAVK RLREEAVRVM EDVGKSVWEK KEWMRRKMLE VEEKKIGYEW EGVEMEKQRV  540
KWLRYRSKKE REMEKAKLDN QRRRLETERM VLMLRRSEIE LNELQQSSAK RVDPSSTATR  600
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477481KKKRR
2477482KKKRRK
3478482KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa15g012510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0109270.0AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence.
GenBankAY0910280.0AY091028.1 Arabidopsis thaliana unknown protein (At3g10040) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464664.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
RefseqXP_010464665.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X2
TrEMBLR0HSJ60.0R0HSJ6_9BRAS; Uncharacterized protein
STRINGXP_010464665.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors