PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa14g025060.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 345aa MW: 37619.1 Da PI: 6.6177

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa14g025060.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	230.3	3.4e-71	113	272	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel........ks 80 r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrer +qlaa+ +k+ ++a + e+ ++ Csa14g025060.1 113 RQGNMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERLAQLAALPAKRIRDAssgggdddR--------ENeknggeddSC 199 7899****************************************************99999998555543322........332334555589 PP DUF702 81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 sal++t++++a+s+ lets++P+e+ss+avfrc+rvss+dd++ee+aYqtavsigGhvfkGiLydqG+++ Csa14g025060.1 200 GGGSALACTRVVNANSS-GLETSHMPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 272 999*******876.99*************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-63	116	271	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.1E-27	118	160	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-26	222	270	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MAGLFYLGGR DHNKQDHQHQ DKDHNEDKSN NYLYLYKDEI YNNNKGFEIW PPQYFQQQQN 60 HVAAPTNLYS FGMVPSGDSN NNNRSTNRSL YFNVVSDHEA PVRSSTGGFT VTRQGNMNCQ 120 DCGNQAKKDC PHMRCRTCCK SRGFDCQTHV KSTWVPAAKR RERLAQLAAL PAKRIRDASS 180 GGGDDDRENE KNGGEDDSCG GGSALACTRV VNANSSGLET SHMPPEISSP AVFRCMRVSS 240 IDDEDEEYAY QTAVSIGGHV FKGILYDQGP SDHHRYSSNL TADSSQHHLN LLDSTASAAT 300 TTAVTVVNSN NGSIDPSSLY TAATAAPFNA FVAAGTPFFA PPRS*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MAGLFYLGGR DHNKQDHQHQ DKDHNEDKSN NYLYLYKDEI YNNNKGFEIW PPQYFQQQQN  60
HVAAPTNLYS FGMVPSGDSN NNNRSTNRSL YFNVVSDHEA PVRSSTGGFT VTRQGNMNCQ  120
DCGNQAKKDC PHMRCRTCCK SRGFDCQTHV KSTWVPAAKR RERLAQLAAL PAKRIRDASS  180
GGGDDDRENE KNGGEDDSCG GGSALACTRV VNANSSGLET SHMPPEISSP AVFRCMRVSS  240
IDDEDEEYAY QTAVSIGGHV FKGILYDQGP SDHHRYSSNL TADSSQHHLN LLDSTASAAT  300
TTAVTVVNSN NGSIDPSSLY TAATAAPFNA FVAAGTPFFA PPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00152	DAP	Transfer from AT1G19790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa14g025060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY924676	0.0	AY924676.1 Arabidopsis thaliana hypothetical protein (At1g19790) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459654.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Refseq	XP_010459655.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Refseq	XP_019091681.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
Swissprot	Q9FXH7	0.0	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
TrEMBL	A0A178VZW5	0.0	A0A178VZW5_ARATH; SRS7
STRING	XP_010459654.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	0.0	SHI-related sequence 7

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]