PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g001500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 323aa    MW: 38327.8 Da    PI: 6.5765
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g001500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.61.6e-2348130186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++ f rsp+qCk+kw+nl +ryk+++++e +     ++++p+ ++++
  Csa13g001500.1  48 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKSFVRSPEQCKSKWKNLVTRYKACETTEPDA---IRQQFPFHNEIQ 130
                     7*******************************************************************985...555788888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004245107IPR001005SANT/Myb domain
CDDcd122036.69E-2147109No hitNo description
PfamPF138371.0E-1848131No hitNo description
PROSITE profilePS500908.00249105IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDRRNPFQHH HHHHQPHHHL IQQQQLPPPP QSTTPAMDPG GGGERIPQWS IEETKELLGI  60
REELDQTFME TKRNKLLWEV VAAKMADKSF VRSPEQCKSK WKNLVTRYKA CETTEPDAIR  120
QQFPFHNEIQ SIFAARMQRM LWSEATEPST SSKRKHNQFS SDDDEEEEEE VDEPNQDINE  180
ELLSLVETQK KETEVITTST STNPRKRAKK GKGVTKAETA AGSTIKEVLE EFMRQTVKME  240
KEWRDAWEMK EREREKREKE WRRRMAELEE ERAAVERRWM EREEERRMRD EARAQKRDIL  300
IDALLNKLNR DHHNDHGHNQ GF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g001500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716770.0AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBankBT0289260.0BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451994.10.0PREDICTED: trihelix transcription factor GT-3a
SwissprotQ9SDW01e-153TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A178UAE81e-151A0A178UAE8_ARATH; Uncharacterized protein
STRINGXP_010451994.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-137Trihelix family protein