PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g055570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 333aa    MW: 36888.6 Da    PI: 6.4917
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g055570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-07345440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++ +++ ++C+++   lC +C ++ H+       Ht++
  Csa12g055570.1  3 AQCDYCGTEKALIYCKSDLAKLCLNCDVNVHSAnplsqrHTRS 45
                    68******99*********************667888888875 PP
2CCT59.61e-20278321144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Csa12g055570.1 278 RDEAKKRYKQKKSRRMFGKQIRYASRKARADTRKRVKGRFVKAG 321
                     99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.343147IPR000315B-box-type zinc finger
SMARTSM003361.9E-10147IPR000315B-box-type zinc finger
PfamPF006434.5E-6345IPR000315B-box-type zinc finger
CDDcd000212.07E-7547No hitNo description
PfamPF062034.1E-16278320IPR010402CCT domain
PROSITE profilePS5101714.366278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEAQCDYCGT EKALIYCKSD LAKLCLNCDV NVHSANPLSQ RHTRSLLCEK CFLQPTVIHC  60
MNEKVSLCQG CHWTASNCNG LGHKLQNLNP YSGCPSPSDF TKIWSSVIEP SATNWVSPFD  120
DSIKINELVD WDGLSTPMVT QSQNLKDHSS IFFMDSKLPK VIEEESSGLD LCDGINLDDA  180
PLNFNASNDI IGCSSPDQTK GYKYEGSFKE DNNTGLSPLF LPALSGGNVV PSMSLSMTNI  240
TGESSPTDYQ DCGISPGFLI GDSPWESNVE VTYNPKSRDE AKKRYKQKKS RRMFGKQIRY  300
ASRKARADTR KRVKGRFVKA GENFEYDASM VM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g055570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449953.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233790.0COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLR0GLP70.0R0GLP7_9BRAS; Uncharacterized protein
STRINGXP_010449953.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.10.0B-box type zinc finger protein with CCT domain