PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g100370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 329aa    MW: 37520.3 Da    PI: 9.0554
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g100370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.36.2e-37194253362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++ +kcprC+st+tkfCyynnyslsqPryfCk+Crry tkGG+lrn+PvGgg+rknkk s
  Csa11g100370.1 194 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYGTKGGTLRNIPVGGGCRKNKKPS 253
                     6789*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-26182247IPR003851Zinc finger, Dof-type
PfamPF027011.8E-30195251IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.177197251IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLLNRSVFRY FSAKRSVLSR KSLSELESLF CSVVVDSSLH QLYRCISETI KPTKRRRCFL  60
MIGNYHMHED RDSFQKYDQI SCSDYRPLGL SAFKNPVKLS LFPVGGIINI VYNLEDTISI  120
NHNWLNAYNL SWVWDLLWKD YKDTEESIED VRDICDDFEA IFQRNLAANT GSSVIRRKHV  180
RLFDFFSLSL TSHDHPQKCP RCESTHTKFC YYNNYSLSQP RYFCKTCRRY GTKGGTLRNI  240
PVGGGCRKNK KPSSSNSSSS TSSGKKPSNI VTTNTTDLMA LTHSHQNYQN SPLGFSDFGG  300
MMGSYSTPEH SNVGFLESKY GGFTFAEP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g100370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0090531e-175AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.
GenBankAK2289921e-175AK228992.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL16-29-O12.
GenBankBT0204671e-175BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBankBT0205761e-175BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBankCP0026881e-175CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63742746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.13e-68Dof family protein