PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g097260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26226.5 Da    PI: 8.3626
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g097260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++gkly+++s
  Csa11g097260.1  9 KRIENIMSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGKLYDFAS 59
                    79***********************************************86 PP
2K-box53.88.3e-1983158984
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                     + e+  + l++e++ + k+i+ Lq + R+l+G+dL+s+s+ eL+++  qLeksl+ +R++K ++  +++e+l++  
  Csa11g097260.1  83 QREQYVQDLKNEITVMVKRIDLLQLQCRKLMGQDLDSCSVDELKEITIQLEKSLTVVRTRKAKINEDEVEKLKEEI 158
                     5688899****************************************************************99763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.572161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-30373IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-28323IPR002100Transcription factor, MADS-box
CDDcd002651.84E-37368No hitNo description
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.9E-1887172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.44588183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVRKKIEIKR IENIMSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGKLYDFASS  60
NMQKMMERCE IYRREYFSAE RFQREQYVQD LKNEITVMVK RIDLLQLQCR KLMGQDLDSC  120
SVDELKEITI QLEKSLTVVR TRKAKINEDE VEKLKEEIEG ERELLNERPR LHLHEMFEEK  180
PLWMQSRSLV SENSAAASCV CVNMNTSDVE TDLFIGLPQS RML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-18166166MEF2 CHIMERA
6byy_B5e-18166166MEF2 CHIMERA
6byy_C5e-18166166MEF2 CHIMERA
6byy_D5e-18166166MEF2 CHIMERA
6bz1_A6e-18166166MEF2 CHIMERA
6bz1_B6e-18166166MEF2 CHIMERA
6bz1_C6e-18166166MEF2 CHIMERA
6bz1_D6e-18166166MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g097260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325423e-48AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281451.11e-128MADS-box protein AGL71
SwissprotQ9LT932e-75AGL71_ARATH; MADS-box protein AGL71
TrEMBLR0GCF91e-127R0GCF9_9BRAS; Uncharacterized protein
STRINGXP_006281451.11e-128(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88051235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.26e-61MIKC_MADS family protein