PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g045140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SAP
Protein Properties Length: 384aa    MW: 43159.8 Da    PI: 6.8301
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g045140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP650.82.2e-198538277454
             SAP  77 fqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGa 171
                     +qvc+tw+avsrsd+lwq l+r++W+rt+l++dtWr+e+iyrhrtarnfrtr+++y+tlqfdp+dvde   +d+lsCrcl+lsd ylaaGfadG+
  Csa11g045140.1   5 LQVCTTWQAVSRSDHLWQLLSRQVWARTHLMHDTWRDEFIYRHRTARNFRTRTHTYFTLQFDPSDVDE---PDSLSCRCLTLSDIYLAAGFADGT 96 
                     69**************************************************************9998...689********************* PP

             SAP 172 vrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpG 266
                     vrlf l++rlhv+t++p  rdr+GrfsravsGivisdsrl+fat+dGdihva idg  ++++r+a++Gd+vndGalvdf+G+grWwvGl+aGvpG
  Csa11g045140.1  97 VRLFLLNNRLHVRTLRPPLRDRFGRFSRAVSGIVISDSRLTFATMDGDIHVADIDG--VGHTRTAYAGDIVNDGALVDFTGCGRWWVGLFAGVPG 189
                     *******************************************************9..66*********************************** PP

             SAP 267 rafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer.rGlivssldasneayvvv 360
                     rafhiWd+++ee++fvGG+ltdPeavmGWh+ltelt+++Gr+r++++etavaCt++r++++dlrnqgv+++e+ee+ rGl v+++da++eayv++
  Csa11g045140.1 190 RAFHIWDCNSEETTFVGGTLTDPEAVMGWHTLTELTTSLGRLRISGNETAVACTRWRIMAIDLRNQGVIIGEDEEQrRGLTVTGFDANEEAYVRM 284
                     **********************************************************************99888779***************** PP

             SAP 361 dsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsss....dgtihll 450
                     dsrG+a+vrrv++ e+vc+frv+g aqr+v+gCvn+ +al++aggv+rvWe+e+ + ylys+rervgev+a+vad+rhv v+ss    +++ihl+
  Csa11g045140.1 285 DSRGNASVRRVNTQETVCEFRVSGaAQRRVMGCVNRLHALMCAGGVMRVWEVESGA-YLYSIRERVGEVDAIVADERHVVVASSsstaQSIIHLW 378
                     ************************9*****************************77.**********************998876677899**** PP

             SAP 451 dfga 454
                     dfga
  Csa11g045140.1 379 DFGA 382
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813835.01E-5655IPR001810F-box domain
Gene3DG3DSA:1.20.1280.503.5E-5666No hitNo description
SuperFamilySSF509782.47E-1174253IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.4E-1075163IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.102.4E-10286380IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.47E-11297379IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MFFKLQVCTT WQAVSRSDHL WQLLSRQVWA RTHLMHDTWR DEFIYRHRTA RNFRTRTHTY  60
FTLQFDPSDV DEPDSLSCRC LTLSDIYLAA GFADGTVRLF LLNNRLHVRT LRPPLRDRFG  120
RFSRAVSGIV ISDSRLTFAT MDGDIHVADI DGVGHTRTAY AGDIVNDGAL VDFTGCGRWW  180
VGLFAGVPGR AFHIWDCNSE ETTFVGGTLT DPEAVMGWHT LTELTTSLGR LRISGNETAV  240
ACTRWRIMAI DLRNQGVIIG EDEEQRRGLT VTGFDANEEA YVRMDSRGNA SVRRVNTQET  300
VCEFRVSGAA QRRVMGCVNR LHALMCAGGV MRVWEVESGA YLYSIRERVG EVDAIVADER  360
HVVVASSSST AQSIIHLWDF GAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g045140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0114850.0AB011485.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450421.10.0PREDICTED: transcriptional regulator STERILE APETALA
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A178UR360.0A0A178UR36_ARATH; SAP
STRINGXP_010440770.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]