PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g004890.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

SRS

Protein Properties

Length: 326aa MW: 34663.7 Da PI: 6.7258

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g004890.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223	6e-69	93	250	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsst 89 rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + ++ +kr+r++ + ++ss+ Csa10g004890.1 93 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgsggtggGSSIPKRHRDT--TLPGTSSSS 185 67899***************************************************99988877789998888889999986..888899999 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l+s ++ e+ +s+P evss+a+frcv++s+vddg+ ++aYqt+ +igGh+fkGiLydqG+e+ Csa10g004890.1 186 RLPSDSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGDGQYAYQTTLNIGGHLFKGILYDQGPES 250 *************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.0E-62	96	249	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.3E-27	98	140	IPR006510	Zinc finger, lateral root primordium type 1
Gene3D	G3DSA:2.30.27.10	3.7E-4	127	185	No hit	No description
TIGRFAMs	TIGR01624	2.5E-28	201	248	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAGIFSLGGN NNNNNGDEED ENQQQQKTNW VWYRPNANTN NINPSSSQQI WQVPPEQMLM 60 HHHPHPQQQQ QQQSLDLYPG HQIDVSDLAT SSRSITISCR DCGNQAKKDC THMRCRTCCK 120 SRGFDCSTHV RSTWIPVARR RERQQQLHMS TSGGGGGSGS GGTGGGSSIP KRHRDTTLPG 180 TSSSSRLPSD SAGLEMGEAS FPGEVSSDAL FRCVKMSGVD DGDGQYAYQT TLNIGGHLFK 240 GILYDQGPES SYMSAGSGGS DHQSSSAGGG GGGNPFNPPI VADGGGGVSS AMFVDPNSGG 300 YYSSNMTTSV FMPPGTQFYQ NPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g004890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432185.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 2
Swissprot	O65517	1e-171	SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBL	R0F6A6	1e-179	R0F6A6_9BRAS; Uncharacterized protein
STRING	XP_010432185.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13648	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	1e-160	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]