PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g090020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CO-like

Protein Properties

Length: 579aa MW: 62787.4 Da PI: 6.6595

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g090020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.1	1.5e-07	5	45	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r C+ ++ ++lfC+ + +lC C ++H H+ Csa09g090020.1 5 RLCDSCKLTAATLFCRADAAFLCGACDGKIHTAnklasrHE 45 78***999*******************5456666665 PP
2	zf-B_box	24.6	5.3e-08	47	92	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ + lC C +H+ H++vp+ Csa09g090020.1 47 VWLCEVCEQAPAHVTCKADAAALCIACDRDIHSAnplsrrHERVPI 92 689****************************6689999999997 PP
3	zf-B_box	24.6	5.2e-08	325	370	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ + lC C +H+ H++vp+ Csa09g090020.1 325 VWLCEVCEQAPAHVTCKADAAALCIACDRDIHSAnplsrrHERVPI 370 689****************************6689999999997 PP
4	CCT	68.4	2e-23	234	277	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ Csa09g090020.1 234 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 277 9*****************************************87 PP
5	CCT	68.4	2e-23	512	555	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ Csa09g090020.1 512 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 555 9*****************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.466	2	49	IPR000315	B-box-type zinc finger
SMART	SM00336	6.3E-14	2	49	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.4E-6	5	46	IPR000315	B-box-type zinc finger
CDD	cd00021	6.65E-7	5	49	No hit	No description
PROSITE profile	PS50119	10.879	45	92	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	47	92	IPR000315	B-box-type zinc finger
CDD	cd00021	3.11E-9	48	92	No hit	No description
SMART	SM00336	2.1E-9	50	92	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.658	234	276	IPR010402	CCT domain
Pfam	PF06203	3.0E-17	234	276	IPR010402	CCT domain
PROSITE profile	PS50119	10.879	323	370	IPR000315	B-box-type zinc finger
SMART	SM00336	1.0E-14	323	370	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.7E-6	325	370	IPR000315	B-box-type zinc finger
CDD	cd00021	3.11E-9	326	370	No hit	No description
PROSITE profile	PS51017	16.658	512	554	IPR010402	CCT domain
Pfam	PF06203	3.0E-17	512	554	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MASSRLCDSC KLTAATLFCR ADAAFLCGAC DGKIHTANKL ASRHERVWLC EVCEQAPAHV 60 TCKADAAALC IACDRDIHSA NPLSRRHERV PIVPFYDAVS GSAKSASSSV NFVDDDGGDA 120 DVSVEAASWL LPKEGGGVEI SNLFSDLEYP KMEVTSENSS GNDGVVPVQN KTMFLSEDYF 180 NFDLAPSKIS QQGFNFINQT DSSRSLDVAL VPENGGVTTT VTMTPVVQLS PAEREARVLR 240 YREKRKNRKF EKTIRYASRK AYAEMRPRIK GRFAKRTDSK GDDGGGDVGV YGGFGVVPTD 300 AAFLCGACDG KIHTANKLAS RHERVWLCEV CEQAPAHVTC KADAAALCIA CDRDIHSANP 360 LSRRHERVPI VPFYDAVSGS AKSASSSVNF VDDDGGDADV SVEAASWLLP KEGGGVEISN 420 LFSDLEYPKM EVTSENSSGN DGVVPVQNKT MFLSEDYFNF DLAPSKISQQ GFNFINQTDS 480 SRSLDVALVP ENGGVTTTVT MTPVVQLSPA EREARVLRYR EKRKNRKFEK TIRYASRKAY 540 AEMRPRIKGR FAKRTDSKGD DGGGDVGVYG GFGVVPSF*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MASSRLCDSC KLTAATLFCR ADAAFLCGAC DGKIHTANKL ASRHERVWLC EVCEQAPAHV  60
TCKADAAALC IACDRDIHSA NPLSRRHERV PIVPFYDAVS GSAKSASSSV NFVDDDGGDA  120
DVSVEAASWL LPKEGGGVEI SNLFSDLEYP KMEVTSENSS GNDGVVPVQN KTMFLSEDYF  180
NFDLAPSKIS QQGFNFINQT DSSRSLDVAL VPENGGVTTT VTMTPVVQLS PAEREARVLR  240
YREKRKNRKF EKTIRYASRK AYAEMRPRIK GRFAKRTDSK GDDGGGDVGV YGGFGVVPTD  300
AAFLCGACDG KIHTANKLAS RHERVWLCEV CEQAPAHVTC KADAAALCIA CDRDIHSANP  360
LSRRHERVPI VPFYDAVSGS AKSASSSVNF VDDDGGDADV SVEAASWLLP KEGGGVEISN  420
LFSDLEYPKM EVTSENSSGN DGVVPVQNKT MFLSEDYFNF DLAPSKISQQ GFNFINQTDS  480
SRSLDVALVP ENGGVTTTVT MTPVVQLSPA EREARVLRYR EKRKNRKFEK TIRYASRKAY  540
AEMRPRIKGR FAKRTDSKGD DGGGDVGVYG GFGVVPSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g090020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472497.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
Swissprot	Q9SK53	1e-167	COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBL	A0A178VTY8	1e-164	A0A178VTY8_ARATH; COL3
STRING	XP_010472497.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2760	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	1e-146	CONSTANS-like 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177 [PMID:27999181]