PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g063060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 326aa    MW: 38666.1 Da    PI: 6.138
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g063060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.81.6e-2448130186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf rsp+qCk+kw+nl +ryk+++++e +     ++++p+ ++++
  Csa08g063060.1  48 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSPEQCKSKWKNLVTRYKACETTEPDA---IRQQFPFHNEIQ 130
                     7*******************************************************************985...555788888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003945107IPR001005SANT/Myb domain
CDDcd122039.26E-2247109No hitNo description
PfamPF138371.7E-1948131No hitNo description
PROSITE profilePS500908.00249105IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDRCNPFQHH HHHHQLHHHL IQQQQLPPPP QTTTAAMDPG GGGERIPQWS IEETKELLGI  60
REELDQTFME TKRNKLLWEV VAAKMADKGF VRSPEQCKSK WKNLVTRYKA CETTEPDAIR  120
QQFPFHNEIQ SIFAARMQRM LWSEATEPST SSKRKHNQFS SDDDEEEEEE EEEVDEPNQE  180
INEELLSLVE TQKKETEVIT TSTSTNPRKR AKKGKGVTKA ETAAGSTIKE VLEEFMRQTV  240
KMEKEWRDAW EMKEREREKR EKEWRRRMAE LEEERAAVER RWMEREEERR MRDEVRAQKR  300
DTLIDALLNK LNRDHHNDHG HNQGF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g063060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716770.0AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBankBT0289260.0BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423949.10.0PREDICTED: trihelix transcription factor GT-3a-like
SwissprotQ9SDW01e-152TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A178UAE81e-150A0A178UAE8_ARATH; Uncharacterized protein
STRINGXP_010423949.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-129Trihelix family protein