PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g056030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 247aa MW: 25487.4 Da PI: 10.4573

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g056030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	26	180	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg..... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+ + Csa08g056030.1 26 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSSPftlG---Krvvra 116 79**************************************************************99999666.2222222222220...123333 PP TCP 89 ...............................................................k 89 + Csa08g056030.1 117 eegesngggggggltvghtmgtslmsgggggsagfwavparpdfgqvwsfatgappemvfaqqQ 180 3344445677777777788888888888888888888888888888887776444444443321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	32	86	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	7.0E-33	32	178	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042752	Biological Process	regulation of circadian rhythm
GO:0043433	Biological Process	negative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MANNDGAVAN GVIIEQTTSN KGPLNAVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT 60 RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTAS LSTSSPFTLG KRVVRAEEGE 120 SNGGGGGGGL TVGHTMGTSL MSGGGGGSAG FWAVPARPDF GQVWSFATGA PPEMVFAQQQ 180 QQPATLFVRH QQQQQHQASA AAAAAMGEAS AARVGNYLPG HHLNLLASLS GGANGSGRRE 240 DDHDPR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00499	DAP	Transfer from AT5G08330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g056030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF412074	0.0	AF412074.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds.
GenBank	AL392174	0.0	AL392174.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8L15 (ESSA project).
GenBank	AY072620	0.0	AY072620.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010423107.1	1e-180	PREDICTED: transcription factor TCP21
Swissprot	Q9FTA2	1e-126	TCP21_ARATH; Transcription factor TCP21
TrEMBL	R0GX40	1e-139	R0GX40_9BRAS; Uncharacterized protein
STRING	XP_010423107.1	1e-179	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-79	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]