PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g002400.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HB-other

Protein Properties

Length: 365aa MW: 40616.7 Da PI: 4.42

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g002400.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.2	1.4e-08	302	349	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +k +e+Le+++++++ p+ + + + ++L+ ++V WF +Ra Csa08g002400.1 302 RVKKAHIETLEKVYRRSKRPTNAVVSSIVQVTNLPRKRVLKWFEDKRA 349 567899*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.669	294	354	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-8	299	354	IPR009057	Homeodomain-like
SMART	SM00389	7.8E-4	300	358	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-6	302	349	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-7	302	360	IPR009057	Homeodomain-like
CDD	cd00086	1.87E-5	305	349	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MAVALSSSSG VVSHLLPPSF SSSSRVSVNR VLFRNRKSSP CSLSLPFHSP SLRSVLVFAR 60 GKNRKGFASS SSPSPKKNKK KSFERDDNGE SEEEDDPFEA LFNLLEEDLK NDNSSIDDEE 120 ISEEELNALA DELARVLGGG DDDDDGIDLF GSATGDVVDD KDENEDEDDN NDDEDDEDEN 180 DDDSEEEDER PSKLKNWQLR RLAYALKAGR RKTSIKNLAA EVCLDRAYVL ELLRDPPPKL 240 LMLSATLPDE KPPVAAPENS SPDPTPVESS SAEEEDVVVE PVEKVKDEAV HVMQQRWSAQ 300 KRVKKAHIET LEKVYRRSKR PTNAVVSSIV QVTNLPRKRV LKWFEDKRAE DGVPDKRAPY 360 QAPV*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MAVALSSSSG VVSHLLPPSF SSSSRVSVNR VLFRNRKSSP CSLSLPFHSP SLRSVLVFAR  60
GKNRKGFASS SSPSPKKNKK KSFERDDNGE SEEEDDPFEA LFNLLEEDLK NDNSSIDDEE  120
ISEEELNALA DELARVLGGG DDDDDGIDLF GSATGDVVDD KDENEDEDDN NDDEDDEDEN  180
DDDSEEEDER PSKLKNWQLR RLAYALKAGR RKTSIKNLAA EVCLDRAYVL ELLRDPPPKL  240
LMLSATLPDE KPPVAAPENS SPDPTPVESS SAEEEDVVVE PVEKVKDEAV HVMQQRWSAQ  300
KRVKKAHIET LEKVYRRSKR PTNAVVSSIV QVTNLPRKRV LKWFEDKRAE DGVPDKRAPY  360
QAPV*

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g002400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002017	0.0	BT002017.1 Arabidopsis thaliana putative protein (At5g11270) mRNA, complete cds.
GenBank	BT008743	0.0	BT008743.1 Arabidopsis thaliana At5g11270 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010419685.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
Swissprot	Q8H0V5	1e-159	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	D7M3N9	1e-173	D7M3N9_ARALL; Uncharacterized protein
STRING	XP_010419685.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12077	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-119	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]