PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa07g054410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 318aa    MW: 35890.1 Da    PI: 8.5887
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa07g054410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.34.2e-55161431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +k+++++++  ++i++vd++k+ePw+Lp+k+k + kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++
  Csa07g054410.1  16 LPPGFRFHPTDEELISFYLVNKIADQNFTG-KAIADVDLNKSEPWELPEKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIYNS 109
                     79*************************999.88***************99999****************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++elvg+kktLvfy+grap+gekt+Wvmheyrl
  Csa07g054410.1 110 tTSELVGMKKTLVFYRGRAPRGEKTSWVMHEYRL 143
                     78889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-6413165IPR003441NAC domain
PROSITE profilePS5100561.34916165IPR003441NAC domain
PfamPF023652.1E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEQGDHQQQK KEEEALPPGF RFHPTDEELI SFYLVNKIAD QNFTGKAIAD VDLNKSEPWE  60
LPEKAKMGGK EWYFFSLRDR KYPTGVRTNR ATNTGYWKTT GKDKEIYNST TSELVGMKKT  120
LVFYRGRAPR GEKTSWVMHE YRLHSKSSYR NSKQDEWVVC RVFKKTEATK KYISSSSSST  180
SHNHNHARAS LLSTNNNNPN YSSDLLQLPP HLHPHPSLNI NQSIMANAVH LAELSRVFRA  240
STSTTMDSAH HQQLMNYNVH MPVSGLNLNL GGALVQPPPV VSLEDVASVS ASFNGENGFG  300
NVEMSQCMDL DGYWPSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-581517116171NO APICAL MERISTEM PROTEIN
1ut4_B4e-581517116171NO APICAL MERISTEM PROTEIN
1ut7_A4e-581517116171NO APICAL MERISTEM PROTEIN
1ut7_B4e-581517116171NO APICAL MERISTEM PROTEIN
3swm_A4e-581517119174NAC domain-containing protein 19
3swm_B4e-581517119174NAC domain-containing protein 19
3swm_C4e-581517119174NAC domain-containing protein 19
3swm_D4e-581517119174NAC domain-containing protein 19
3swp_A4e-581517119174NAC domain-containing protein 19
3swp_B4e-581517119174NAC domain-containing protein 19
3swp_C4e-581517119174NAC domain-containing protein 19
3swp_D4e-581517119174NAC domain-containing protein 19
4dul_A4e-581517116171NAC domain-containing protein 19
4dul_B4e-581517116171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa07g054410.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064030.0AC006403.4 Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010417199.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_010417200.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_019083731.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8517e-79NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLR0G1T70.0R0G1T7_9BRAS; Uncharacterized protein
STRINGXP_010417199.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68512841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.20.0NAC domain containing protein 38
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]