PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g041010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 292aa    MW: 34665 Da    PI: 7.0774
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g041010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.62.5e-2644126186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +Wt +e+++Li +r e+++++ ++k++k lWe +s+kmr++ f rsp+qCk+kw+nl +r+k ++++e +    +++++p++d+++
  Csa06g041010.1  44 QWTVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTRFKGCETMEAEI---ARQQFPFYDDMQ 126
                     7********************************************************************97...45679*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002441103IPR001005SANT/Myb domain
CDDcd122033.91E-2343108No hitNo description
PfamPF138373.7E-2044126No hitNo description
PROSITE profilePS500907.74745101IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDGHHHLQQL QYLNKHHHLH HPHPQSSQTP EIASPVAGGD RFPQWTVEET KELIGIRGEL  60
DQTFMETKRN KLLWEVISNK MRDKSFPRSP EQCKCKWKNL VTRFKGCETM EAEIARQQFP  120
FYDDMQIIFT TRMQRMLWVE SEGGVGGTSG TVARKREYSS DEEEENVNEE LVDVSNDPKI  180
LTNPKKNIAK KRKGGSNSNN GVREVLEEFM RHQIRMESEW REGWEAREKE RAEKEEEWRR  240
KMEELEKERV TMERMWRDRE EQRRSREEMR AEKRDSQINA LLAKLTRDGS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A5e-1341122384DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183192PKKNIAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g041010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4535820.0AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517113.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804501e-133TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLD7LLG41e-143D7LLG4_ARALL; Predicted protein
STRINGXP_010517113.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-98Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]