PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512860.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 405aa    MW: 46332.6 Da    PI: 4.9791
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.7e-071558340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + + ++++fC  ++ +lC+ C +  H+       H++v
  XP_004512860.1 15 ARACDSCLRRRARWFCGADDAFLCHGCDTLVHSAnqlasrHERV 58
                    578*****************************657788888876 PP
2CCT66.85.9e-23346389144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  XP_004512860.1 346 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 389
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.2961360IPR000315B-box-type zinc finger
SMARTSM003364.0E-91360IPR000315B-box-type zinc finger
PfamPF006432.8E-61558IPR000315B-box-type zinc finger
CDDcd000219.26E-81660No hitNo description
PROSITE profilePS5101715.993346388IPR010402CCT domain
PfamPF062039.2E-18346388IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MKGDADSGAL GAKTARACDS CLRRRARWFC GADDAFLCHG CDTLVHSANQ LASRHERVRL  60
QTASAKVTTA QAWHSGFTRK ARTPRHHNKN LLLQQKQQRL KEKVLFNTSV FLPLVPEIGG  120
EEEHEPALVV DDHEAEEEEE EQLMCRVPVF DVDPFDLETC NLKNDAADFE EMCDLDSFVE  180
FDVDLAEFAA NVESLLGVHE NSTTQVFDYK QENNEMDASK NEMLKVKDEE LDDLESVFDM  240
TSDEVFQWNI DCNNETVAQE EKECVVGSFD AKEETKRERF LRLNYEDVIS AWNIQGSPSP  300
WTTGNPPKFI SHDDCWQNFL GPSGVDEEVR SLRGQLIGNI NGDGGREARV SRYREKRRTR  360
LFAKKIRYEV RKLNAEKRPR MKGRFVKRTT CFAGTTTTSF PTYQH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356372RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512860.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S2Z0H80.0A0A1S2Z0H8_CICAR; zinc finger protein CONSTANS-LIKE 16
STRINGXP_004512860.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.18e-84B-box type zinc finger protein with CCT domain