PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511735.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 541aa    MW: 60150 Da    PI: 6.8904
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.2e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_004511735.1  7 CHHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-11545No hitNo description
CDDcd002026.44E-17653No hitNo description
PfamPF003203.7E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.121740IPR000679Zinc finger, GATA-type
PfamPF139191.8E-9283369IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGKQGPCHHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAETDDCDDQ  60
RATRVKSISL NKNKEAKLLK RKQNHENVVS GRIASDYNHG FQKAVDEDYS TRSSSGSALS  120
NSESCAQFGG ADASDLTGPA QSVIWDATVP SKKRTCVGRA KPSSVEKLTK DLCTILHEQQ  180
SYFSASSEED LLFESETPMV SVEIGHGSVL IRHPSYVARE EESEASSLSF DNRQYPMSEA  240
YSYSGSVLMH DSSSRSNFSS QGAEKVRNSA FHGMKHEQLK SDKSQLERVQ ILGNHDSPLT  300
LIDLNDVVNY EEFSRILTNE EQQQLLKFLP VIDTAKLSDS LKVMFDSVQF KDNLTYFQQL  360
LAEGVFDISL LGAKPEDCKT LKRFALSNLS KSKWVEHYHF LKRCKNRAEK SDTPGSYGIG  420
STNVANAKRM RDSRNQNFPE VKTIMRSPKR TITKTSYEGK VVDDETCYNP KSLLFPLPPD  480
ASSHLLDSFN FVEESSDQDL LLEVPSNNSF PQAELLHPSL SYGAQASTSS SSAAYSHLVN  540
H
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511735.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9317351e-100CR931735.1 Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511735.10.0GATA transcription factor 26
SwissprotQ8W4H11e-155GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1S2YY020.0A0A1S2YY02_CICAR; GATA transcription factor 26
STRINGXP_004511735.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-157GATA transcription factor 26