![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004511477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22654.1 Da PI: 4.4536 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50 | 7.5e-16 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr +k +g++v+eIr+p gk+ r++lg++ +e+Aa+a++ a+ +l+g XP_004511477.1 19 SYIGVRKRK-WGKFVSEIREP---GKKSRIWLGSYEEPEMAAAAYDVAAYRLKG 68 599***999.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.82E-18 | 18 | 78 | No hit | No description |
PROSITE profile | PS51032 | 21.074 | 19 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 19 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-28 | 19 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-32 | 19 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 19 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 58 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MEESNSMQEH NAIAPTPKSY IGVRKRKWGK FVSEIREPGK KSRIWLGSYE EPEMAAAAYD 60 VAAYRLKGRA ARLNFPELIE NLPQPASSNA EDIRVAAQQA ALQFKEIANE GGVNSNGSVV 120 PTRVGLSPSQ IQAINDSPLD SPKMWMQMSE ALIFGFEFDD QSSRMVNYNY DNNNNNNNNN 180 NSNVLELSEW EEIQYESLWD S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-17 | 18 | 76 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004511477.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511477.1 | 1e-146 | ethylene-responsive transcription factor ERF022-like | ||||
TrEMBL | A0A1S2YXF5 | 1e-144 | A0A1S2YXF5_CICAR; ethylene-responsive transcription factor ERF022-like | ||||
STRING | XP_004511477.1 | 1e-145 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G33760.1 | 9e-43 | ERF family protein |