PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004508957.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 537aa    MW: 59455.7 Da    PI: 6.639
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004508957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.1e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_004508957.1  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                    ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.1E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-11546No hitNo description
CDDcd002027.48E-17654No hitNo description
Gene3DG3DSA:3.30.50.102.5E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.8E-14741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.0E-7285374IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLVNYTPLHA RSEPLNHEDQ  60
RVSRLKIVSL NKNKDVKLVK RKQNHDNAAS GELTPEYDQG FQKAVDEDTS NRSSSGSAIS  120
NSESCVQFGG ADASDLTGPS QSVVWDTVVP SKKRTCAGRM KNSSVEKLTK DLCTILHEQQ  180
QSCFSASSEE DLLYESETPM VSVEIGHGSM LIRHPSSIAR DEESEASSLS VDNKQCLLNE  240
AYSCYGSIPM FSDCGGMNFS SQGVGKVRNS ATGQRMQQEQ LKRDKSQLEK LEVLGNHDSP  300
LCLIDLNDVV NYEEFSRNLT YEEQQQLLKY LPVVDTAKLP DSLKIMFDSF QFKEDLTYFQ  360
KLLGEGVLDF SLLEANLEEC KTLKRLALSN LSKSKWVEHY NSLKRAGKCN DMESPAVASS  420
NVANVKRLRV SQNQNLTESK TTMRSPKRVI IKAGFGGKEV VDGSSISPQR LFALPRNGGL  480
HMLDSSNFVD ESSDQDLLLE FPSNNSFPQA ELLLPTSSLV PQHSTSSSSV YSHVTRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004508957.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508957.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-149GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1S2YRX80.0A0A1S2YRX8_CICAR; GATA transcription factor 26-like
STRINGXP_004508957.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-151GATA transcription factor 26