PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502110.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 412aa    MW: 45535.4 Da    PI: 4.8125
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ +++++   +C+++  +lC +C  + H+       H++
  XP_004502110.1  4 VCDFCGQQRSMVYCRSDAACLCLSCDRNVHSAntlarrHSR 44
                    6*****************************65667767765 PP
2zf-B_box22.91.8e-074688441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41
                      C++++++++   C + +  lC++C   +H +     H++++
  XP_004502110.1 46 LLCERCSSQPALVRCSEEKISLCQNCDWLGHGNstsstHKRQT 88
                    57*****************************558999999876 PP
3CCT61.82.2e-21355398144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R  a++RYkeK+ktRkF+K++rY+sRK++A+ R RvKGrFvk+ 
  XP_004502110.1 355 RSSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAG 398
                     889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
CDDcd000216.24E-7447No hitNo description
PROSITE profilePS501198.9164389IPR000315B-box-type zinc finger
CDDcd000216.91E-44789No hitNo description
SMARTSM003362.34889IPR000315B-box-type zinc finger
PfamPF062034.3E-16355397IPR010402CCT domain
PROSITE profilePS5101715.408355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGYVCDFCGQ QRSMVYCRSD AACLCLSCDR NVHSANTLAR RHSRTLLCER CSSQPALVRC  60
SEEKISLCQN CDWLGHGNST SSTHKRQTIN CYSGCPSSAE LSSIWSFVLD IPSLSETTCE  120
QELGFMSINE NRSAWVAPKN QNVSDSDQVT DLPDMDKSWA GTSSKPESSS EPRLLDHSPG  180
STKECVPKLY CSATKCPEER EDKDDLYGDF DMDEMDINIE NYDELFGMAL THSEELFENG  240
GFNSLFGAKE MSAGDSDCQD AIAAEGSSVG HFNATQPACS NAASADSILS TKTEPNLCIT  300
AKQAQSNLSF SGINEESGGA GDYQDCGASS MLLMGEPPWL NTCPENDLQL QSANRSSAVM  360
RYKEKKKTRK FDKRVRYASR KERADVRRRV KGRFVKAGDV YDYDPLSQTR SY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1436830.0BT143683.1 Medicago truncatula clone JCVI-FLMt-20N9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502110.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_012571771.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-143COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1S3E9U70.0A0A1S3E9U7_CICAR; zinc finger protein CONSTANS-LIKE 9
STRINGXP_004502110.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-131CONSTANS-like 9