PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498912.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 532aa    MW: 59630.4 Da    PI: 6.2572
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.5e-084514891854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  XP_004498912.1 451 MFQNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 489
                     5887779******************************88 PP
2BELL69.46.7e-23322392172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r+  ++kk++Ll ll+ Vd++Y+q+ ++++tv+s+F+a+++l++ ++++++A k++S  ++ L+++i+++i
  XP_004498912.1 322 QRHTSESKKSQLLMLLQLVDNQYSQCLDEIHTVVSAFHAATELDP-QIHAHFAVKTVSLLYKDLRERISNHI 392
                     578899***************************************.***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.0E-20245390IPR006563POX domain
PfamPF075263.7E-26251389IPR006563POX domain
PROSITE profilePS5007111.029430493IPR001356Homeobox domain
CDDcd000866.66E-11433493No hitNo description
SMARTSM003894.1E-5433497IPR001356Homeobox domain
SuperFamilySSF466894.71E-15435501IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-25436499IPR009057Homeodomain-like
PfamPF059201.2E-14450489IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MENDVYNAPM NISGQISNVI EDITHHLTQK PLIHCYSFDL NNQNNIINGI PILSSGEQDQ  60
HDVSNGHVDA VSFINHATIA DSSSFVTSHG RTIVGDASNL IVNSEFQRPI HSVSIPARIG  120
LQENLEALGT YMFNNWHDNS NSNPLCSSFG DGNGFMPSYS SIPNIDPNGW QSSNVANLTN  180
LAYSSSNCSN ELSLSLATSP TSGQCSEISC SDLTHSMNGT TRSGLEQPSC SSMELSMSLG  240
SDKHVRFSPA ILGSRYLAVI QEILVQIATY SFENLDEINY SASGVRGRGN KSTSYSTTKR  300
RIGMNHDTSS MSEEAYADSS LQRHTSESKK SQLLMLLQLV DNQYSQCLDE IHTVVSAFHA  360
ATELDPQIHA HFAVKTVSLL YKDLRERISN HILAMGSNFN SSWSEEDKEL SVETSFIQKQ  420
WALQQLKKKD QLWRPQRGLP ERSVSVLRDW MFQNFLHPYP KDAEKHLLAI KSGLTRSQVS  480
NWFINARVRL WKPLIEEMYA EMNRRKVCRN EGENESSERS RISMNNQMFN IN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498912.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743041e-165AC174304.20 Medicago truncatula clone mth2-108f8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498912.10.0homeobox protein ATH1
RefseqXP_027189134.10.0homeobox protein ATH1
SwissprotP487311e-108ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A1S2Y3U00.0A0A1S2Y3U0_CICAR; homeobox protein ATH1
STRINGXP_004498911.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-92homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]